Pairwise Alignments

Query, 303 a.a., putative transport protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 277 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  150 bits (378), Expect = 4e-41
 Identities = 78/275 (28%), Positives = 153/275 (55%), Gaps = 6/275 (2%)

Query: 30  NADGLDK----LSLITQQLVDFGIRAGERILIATLVFIVGRFLISMLNRFVGRLMDRRKV 85
           N +GL++    L  +   L +F ++   +++ A L+F++G ++ + ++  V +  ++ ++
Sbjct: 2   NENGLEQELAQLQNVYNLLTEFLVKYSFQLVGALLIFLLGLWVANKISNLVAKQFEKHEI 61

Query: 86  DISIKTFVKSLVNILLTILLIISVVGALGVETTSFAALLASAGVAVGMALSGNLQNFAGG 145
           DI++  FV +LV IL+ +++ +  +G LG+  T   A + +A +  G+AL G L N+A G
Sbjct: 62  DITLSNFVSNLVRILIIVMVGVIALGKLGISITPMVAAIGAASLGAGLALQGMLSNYAAG 121

Query: 146 LIVLLFKPYKVGDWIESQGVSGTVKEIQIFHTILTTGDNKVIYIPNGAMSSGVVTNYNTQ 205
           + +++ +P+ VG+ IE QGVSG VK I +  T+LT  + +VI IPN  +   ++  +N+ 
Sbjct: 122 VTIIVTRPFVVGNTIEIQGVSGVVKSIHLGLTLLTNEEGEVISIPNKHIVGEIL--HNSF 179

Query: 206 TTRRVEWIVGVDYGEDYNKVQQIVRDILTADNRILTDPAPFIALHALDASSVNVVARVWV 265
           + + VE    + Y  D N+V  I + +L A+  +  + AP I ++  ++  + +  R WV
Sbjct: 180 SDKLVEIRFNISYASDANQVLAIAQQVLDANEEVNQERAPQIGINGFNSIGLEIGLRYWV 239

Query: 266 NTADYWGVYFDINKTIYETFNEKGINFPFPQLTVH 300
            T  Y+   + +N  +     + GI  P P   +H
Sbjct: 240 PTNRYYQNKYQVNLELINALRQAGIEIPCPVREIH 274