Pairwise Alignments

Query, 1010 a.a., multidrug efflux membrane fusion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1058 a.a., hydrophobe/amphiphile efflux-1 family RND transporter from Pedobacter sp. GW460-11-11-14-LB5

 Score =  553 bits (1426), Expect = e-161
 Identities = 337/1032 (32%), Positives = 560/1032 (54%), Gaps = 32/1032 (3%)

Query: 8    IRRPVLATVLTIIILLFGFIGYSYLGVREYPSVDNPIISVSCSYPGANADVIENQITEPL 67
            I RPVL+TV++III++ G +G   L + +YP +  P + VS SY GANADV+ + +  PL
Sbjct: 6    IDRPVLSTVISIIIVILGVLGLVTLPISQYPEIAPPTVQVSASYQGANADVVMSSVVVPL 65

Query: 68   EQNINGIPGIRSL-SSVSQQGQSRITVEFELSVDLETAANDVRDKVSRAQRYLPRDCDPP 126
            E+ ING+  +  + SS S  G + ITV F+L  + + AA +V+++V+RA   LP +    
Sbjct: 66   EEQINGVEDMTYMTSSASNDGTATITVNFKLGTNADLAAVNVQNRVARATSLLPAEVTRS 125

Query: 127  TVSKADADAMPILMVALQSDKRSLLE--LSEIADLTVKEQLQTISDVSSVSIWGEKRYSM 184
             V  A   A  +L+ A+ SD  S  +  L   A++ +  +++ IS V   S +G   Y+M
Sbjct: 126  GVITAKRQASNLLIFAIYSDDPSYDQKFLQNYANINIIPEIKRISGVGDASAFGTLDYTM 185

Query: 185  RLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSI--EGNTT-ELTIRTLGLMHTADEFN 241
            R+WL P  MA YG+ P DV  A+  +N+E   G    +GN   + T++  G + +  EF+
Sbjct: 186  RIWLKPEVMAVYGLVPNDVSVALAEQNIEAAPGQFGEQGNQAFQYTLKYSGRLKSETEFS 245

Query: 242  NLIVKED-NNRIVRFSDIGRAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVY 300
            N+I+K D N +I+R  D+ R ELG     SY+K NG P +G+ +    G+N  E+ +   
Sbjct: 246  NIIIKADANGQILRLKDVARIELGAQSYASYVKFNGKPALGIAISQTAGSNAKEVIENSI 305

Query: 301  KRMEQMKKDLPEDVTYSYGFDNTKFIRASINEVKETVYVAFILVIIIIFLFLRDWRVTLV 360
            K +++     P+ V Y    +   F+ ASI +V  T+  AFILV +++F+FL+D+R TL+
Sbjct: 306  KTLDKAATSFPKGVHYETVVNVNNFLDASIEKVIHTLIEAFILVFLVVFIFLQDFRSTLI 365

Query: 361  PCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENIYIRIEKGMS-P 419
            P I +PV++IG FF + L GF+IN+L++ A+VLA+G+VVDDAIV+ E ++ +++ G   P
Sbjct: 366  PAISVPVAIIGTFFFLSLFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDAGYKDP 425

Query: 420  KEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGSVIISSFAALT 479
            K+A  +   +I  A+IS T+ + AVF P+ F+QG +G  +++F + ++ ++I+S+  ALT
Sbjct: 426  KKATKDAMDDISGAIISITLVMAAVFIPVSFIQGSSGVFYKQFGLTLAIAIILSAINALT 485

Query: 480  FTPMLATKLLIKREKQNW--------FYTKTEPFFEGMNRWYSRSLAAFLRKRWLALPFT 531
             +P L    L    + +         FYT     F+ + + Y RS+    +KRWLA    
Sbjct: 486  LSPALCAMFLKPHAEDHEKSKNFLQRFYTAFNTSFDAVTQKYKRSVGFLGKKRWLAGLGI 545

Query: 532  FITICLIGFLWNAIPAEMAPLEDRSQISINTRGAEGVTYEYIRDYTEDINQLVDSILPDA 591
             +   ++ ++ N  P    P ED   +  +       + E        IN +V  + P+ 
Sbjct: 546  AVFAVVLVWIMNTTPKGFVPNEDLGTVFSDISLPPSTSQEETDKIIVKINDIVSKV-PEV 604

Query: 592  EA----VTARVSSGSGN------VRITLKDMKDRDYTQMEVAEKISKAVQKKTMARSFVQ 641
            EA    V   + SGSG+       R+   D + RD   + + E  +KA   K     F  
Sbjct: 605  EATFRVVGRSLISGSGSSYGMVIARLKPWDQRKRDVKAI-IGELFAKAAGIKGAKVIFFA 663

Query: 642  QQSSFGGRRGSMPVQYVLQ---ATNLEKLQEVLPQFMAKVYENPVFQMADVDLKFSKPEA 698
              +  G   G    ++ LQ     +++K  EV   F+  + + P  Q A      + P+ 
Sbjct: 664  PPTIQGFGTGG-GFEFQLQDKTGGDIKKFNEVGNAFLGALSKRPEIQYASTSFNPNFPQY 722

Query: 699  RIRINRDKASVMGVSTKNIAQTLQYGLSGQRMGYFYMNGKQYEILGEINRQQRNKPADLK 758
            +I +N  K    G++  ++   LQ    G     F   GKQY ++ + + + R     L 
Sbjct: 723  QIDVNVAKVKQAGLTVSDVLGVLQGYYGGVYASNFNKFGKQYRVMYQADAKYRANQQSLT 782

Query: 759  AIYIRSSNGDMIQLDNLIELENGIAPPKLYRYNRFVSATISAGLADGKTIGQGLDEMDKI 818
             IY+R+S+G M  +   I LE    P  + R+N + S  ++     G + G  +  + + 
Sbjct: 783  NIYVRNSSGTMAPISEFITLEKVYGPQAISRFNLYTSIAVTGNPNAGFSSGDAIKAIQEE 842

Query: 819  AKETLDDTFRTALSGDSKEYRESSSSLMFAFILAILLIYLILAAQFESFKDPLIIMLTVP 878
            A   L   +    SG S+E   S S  +F F+L ++ +Y +L+AQ+ES+  PL ++ ++P
Sbjct: 843  AAIHLPTGYGYEFSGLSREEVSSGSQTIFIFLLCVIFVYFLLSAQYESYILPLAVLFSLP 902

Query: 879  LAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFANQKQEAGEDKMSAIKDA 938
            + +AG  +F     +  NI++QI +IML+GL+AKN ILIVE+A  ++  G   +++  D 
Sbjct: 903  IGLAGVFIFDKIFGVDNNIYTQITLIMLVGLLAKNAILIVEYAVDRRRKGMSIVNSAIDG 962

Query: 939  ALQRLRPILMTSASTVLGLIPLAFASGEGANQRIAMGTAVVGGMVVSTLLTMYIVPAIYS 998
            A  RLRPILMTS + +LGL+PL  +SG GA    ++GT  VGGM++ T+  ++++PA++ 
Sbjct: 963  ATARLRPILMTSFAFILGLLPLMLSSGVGAAGNTSIGTGAVGGMLIGTIFGVFVIPALFI 1022

Query: 999  YISTNRIKITKE 1010
               T + KI+ +
Sbjct: 1023 VFQTLQEKISNK 1034