Pairwise Alignments

Query, 1010 a.a., multidrug efflux membrane fusion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1078 a.a., nodulation protein from Herbaspirillum seropedicae SmR1

 Score =  525 bits (1352), Expect = e-153
 Identities = 338/1056 (32%), Positives = 551/1056 (52%), Gaps = 56/1056 (5%)

Query: 1    MNISELSIRRPVLATVLTIIILLFGFIGYSYLGVREYPSVDNPIISVSCSYPGANADVIE 60
            MNIS   I+RP+  T+LTI I L G + +  L V   P VD P IS+S S PGA+ + + 
Sbjct: 1    MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60

Query: 61   NQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSRAQRYLP 120
              +  PLE+ +  I G+  ++S S Q  +RIT++F+LS D++ AA DV+  ++ A+  LP
Sbjct: 61   ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120

Query: 121  RDCDP-PTVSKADADAMPILMVALQSDKRSLLELSEIADLTVKEQLQTISDVSSVSIWGE 179
                  PT  K +    PIL++A+ SD  +  ++ + AD  V ++L  +  V  VS+ G 
Sbjct: 121  TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180

Query: 180  KRYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLGLMHTADE 239
             + ++R+ L+P  +  YGI   DV+ AV   N   P G +E       I       TA E
Sbjct: 181  SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240

Query: 240  FNNLIVKEDNNRIVRFSDIGRAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAV 299
            +  LIV   N   VR  D+       AD+++    NG P V +++  QPGAN I+  D V
Sbjct: 241  YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300

Query: 300  YKRMEQMKKDLPEDVTYSYGFDNTKFIRASINEVKETVYVAFILVIIIIFLFLRDWRVTL 359
             + + Q++  +P  +      D T  IRAS+ E + T+ ++  LVI+++FLFLR+ R TL
Sbjct: 301  RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360

Query: 360  VPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENIYIRIEKGMSP 419
            +P + +PVSLIG F VMYLAGFS++ LS++A+ +A G VVDDAIV+ ENI   IE GM P
Sbjct: 361  IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420

Query: 420  KEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGSVIISSFAALT 479
             +A + GA+E+ F V+S +I+L+AVF PI+ M+G+ GRLFREF+I +S ++++S   +LT
Sbjct: 421  YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480

Query: 480  FTPMLATKLL--------IKREKQNWFYTK----TEPFFEGMNRWYSRSLAAFLRKRWLA 527
             TPM+  +LL         +R++++ +  K    +   FE M   Y R+LA  LR   L 
Sbjct: 481  TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM 540

Query: 528  LPFTFITICLIGFLWNAIPAEMAPLEDRSQISINTRGAEGVTYEYIRDYTEDINQLV--D 585
            +     TI L  +L+ AIP    P +D  ++    RG + ++++ +R    +   +V  D
Sbjct: 541  MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD 600

Query: 586  SILPDAEAVTARVSSGSGNVRITLKDMKDRDYTQMEVAEKISKAVQKKTMARSFV--QQQ 643
              + D  A T       G + +TLK + +R  +  +V  ++     K   AR F+   Q 
Sbjct: 601  PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKVVARLRIKTAKVAGARVFLVPVQD 660

Query: 644  SSFGGRRGSMPVQYVLQATNLEKLQEVLPQFMAKVYENPVFQMADVDLKFSKPEARIRIN 703
               G R+     +Y L++ ++  L+   P+    +      +    D + +  +  + I+
Sbjct: 661  IRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQTTLTID 720

Query: 704  RDKASVMGVSTKNIAQTLQYGLSGQRMGYFYMNGKQYEILGEINRQQRNKPADLKAIYIR 763
            R+ A   GV+ + I  TL      +++   Y    QY ++ E   Q    P  L+  Y+ 
Sbjct: 721  RETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLRDTYVS 780

Query: 764  --------------------SSNGDM-----------------IQLDNLIELENGIAPPK 786
                                S++G +                 I L      E       
Sbjct: 781  LAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEPTTTSLS 840

Query: 787  LYRYNRFVSATISAGLADGKTIGQGLDEMDK-IAKETLDDTFRTALSGDSKEYRESSSSL 845
            +    +FV++T+S  LA+G ++ Q    +D+ +A+  +        +G +  ++ S+SS 
Sbjct: 841  VSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQSSTSSQ 900

Query: 846  MFAFILAILLIYLILAAQFESFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIM 905
                + A+L +Y++L   +ES   P+ I+ T+P A  GAL+ +       ++ + IG+I+
Sbjct: 901  PLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIALIGVIL 960

Query: 906  LIGLVAKNGILIVEFA-NQKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFAS 964
            LIG+V KN I++V+FA + ++  G     AI +A   R RPI+MT+ + +LG IPLA   
Sbjct: 961  LIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGH 1020

Query: 965  GEGANQRIAMGTAVVGGMVVSTLLTMYIVPAIYSYI 1000
            G+GA  R  +G ++VGG+VVS LLT+Y  P +Y Y+
Sbjct: 1021 GDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYM 1056