Pairwise Alignments

Query, 1010 a.a., multidrug efflux membrane fusion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1048 a.a., multidrug transporter from Herbaspirillum seropedicae SmR1

 Score =  541 bits (1394), Expect = e-158
 Identities = 325/1013 (32%), Positives = 555/1013 (54%), Gaps = 18/1013 (1%)

Query: 1    MNISELSIRRPVLATVLTIIILLFGFIGYSYLGVREYPSVDNPIISVSCSYPGANADVIE 60
            MN S   I RPV  ++L + ILL G + Y  L +   P VD P I V   YPGA+ DV+ 
Sbjct: 1    MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60

Query: 61   NQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSRAQRYLP 120
            + +T PLE+    +PG++ +SS S  G S IT++F L + L+ A  +V+  ++     LP
Sbjct: 61   SSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLP 120

Query: 121  RDCD-PPTVSKADADAMPILMVALQSDKRSLLELSEIADLTVKEQLQTISDVSSVSIWGE 179
             D   PP  SK +    PI+ +A+ S+   L ++ ++ D  + +++  +S V  VS+ G 
Sbjct: 121  SDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGG 180

Query: 180  KRYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLGLMHTADE 239
            +R ++R+ L+P  +A  G+   DV+ A+ N NV    GS +G T   TI     + +ADE
Sbjct: 181  QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240

Query: 240  FNNLIVKEDNNRIVRFSDIGRAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAV 299
            + NLI+   N   +R SD+     G  +++     N  P V V +  QPGAN I + D++
Sbjct: 241  YRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSI 300

Query: 300  YKRMEQMKKDLPEDVTYSYGFDNTKFIRASINEVKETVYVAFILVIIIIFLFLRDWRVTL 359
             K + Q++  LP  +      D T  IRAS+++VK  + ++  LV+++IF+FLR+   T+
Sbjct: 301  KKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATI 360

Query: 360  VPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENIYIRIEKGMSP 419
            +P + +P+SL+G F +MYLAGFSIN L+++A+ +A G VVDDAIVM ENI   IE+GM P
Sbjct: 361  IPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420

Query: 420  KEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGSVIISSFAALT 479
             +A ++GA++I F +IS T +L+AV  P++FM  + GRLF EF++ ++ S++IS+  +LT
Sbjct: 421  MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480

Query: 480  FTPMLATKLLIKR--EKQNWFYTKTEPFFEGMNRWYSRSLAAFLRKRWLALPFTFITICL 537
             TPM+  +LL  +  E+Q WFY K++ FF+ +   Y   L   L ++ L L     T+ L
Sbjct: 481  LTPMMCARLLRHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTLLVAAATLGL 540

Query: 538  IGFLWNAIPAEMAPLEDRSQISINTRGAEGVTYEYIRDYTEDINQLVDSILPDAEAVTA- 596
               L+  +P    PL+D   I   +   + +++  + +  + + ++V    P  E++T+ 
Sbjct: 541  TVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQD-PAVESLTSF 599

Query: 597  ------RVSSGSGNVRITLKDMKDRDYTQMEVAEKISKAVQKKTMARSFVQ---QQSSFG 647
                    +  SG + I LK    R+ +  +V  ++   +  +    +      Q  +  
Sbjct: 600  IGVDGTNATLNSGRMLINLKPHDVREVSATDVIRRLQGKLAAEVPGITLYMQPVQDLTIE 659

Query: 648  GRRGSMPVQYVLQATNLEKLQEVLPQFMAKVYENPVFQMADVDLKFSKPEARIRINRDKA 707
                    Q+ L+  +   L   +P+ +A++ +         +L+    +A I I+R+ A
Sbjct: 660  DSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQAYIEIDRNAA 719

Query: 708  SVMGVSTKNIAQTLQYGLSGQRM-GYFYMNGKQYEILGEINRQQRNKPADLKAIYIRSSN 766
            S +G++T  I   L Y   GQR+    Y    QY ++ E+  + ++ PA L +IY+ +S 
Sbjct: 720  SRLGITTAAIDNAL-YNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALDSIYLVTSG 778

Query: 767  GDMIQLDNLIELENGIAPPKLYRYNRFVSATISAGLADGKTIGQGLDEMDKIAKET-LDD 825
            G  + L ++  +    AP  +    +F +AT+S  LA G ++G+ +  +    +E  +  
Sbjct: 779  GGKVPLSSIATVTERTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIKAAEEEIGMPA 838

Query: 826  TFRTALSGDSKEYRESSSSLMFAFILAILLIYLILAAQFESFKDPLIIMLTVPLAIAGAL 885
            +  T   G +  ++ S S+ ++  + AI+ +Y++L   +ES+  P+ I+ T+P A  GAL
Sbjct: 839  STVTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGAL 898

Query: 886  VFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFA-NQKQEAGEDKMSAIKDAALQRLR 944
            + +      + I   IGII+LIG+V KN I++++FA   ++  G+    AI  A L R R
Sbjct: 899  LSLMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFR 958

Query: 945  PILMTSASTVLGLIPLAFASGEGANQRIAMGTAVVGGMVVSTLLTMYIVPAIY 997
            PILMT+ + +LG +PL   +G G+  R  +G  +VGG++VS +LT++  P IY
Sbjct: 959  PILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIY 1011