Pairwise Alignments

Query, 164 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 52.4 bits (124), Expect = 4e-12
 Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 32  DYYQEILIRLWKAYPKFKQESTVSTWLYRVTLNTAIDLVRKESVQPVYKELSTQEYAIHD 91
           D  QE  IR ++A P+++ E+ + TWL ++  N A+DL+R+     V       E     
Sbjct: 47  DLTQETFIRAYQALPRWRPEARLQTWLLQIARNAALDLLRQRQRHVVLAADEQAEPIDPA 106

Query: 92  SHPEENTATDKK-EQLYQAINRLSEIEKAIIIL-YLESYEYKEIAAVIGISESNVGVKIN 149
             P     + +  E L + + RL   ++ I++L  +E   Y E+AA + ++   V  ++ 
Sbjct: 107 PSPLRRLQSARDLEMLERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLA 166

Query: 150 RIKKQLI---KQLNNG 162
           R ++ L+   +Q N G
Sbjct: 167 RAREALLHGYRQANGG 182