Pairwise Alignments

Query, 164 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 184 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 55.8 bits (133), Expect = 4e-13
 Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 7/130 (5%)

Query: 31  EDYYQEILIRLWKAYPKFKQESTVSTWLYRVTLNTAIDLVRKESVQPVYKELSTQEYAIH 90
           ++  QE  +RLW   P+F+ ES   TW Y + LN A+  +++      +      ++ I 
Sbjct: 59  DEILQESFVRLWHKLPQFRGESQFGTWFYSLALNQALSTLKQHR---SFWARMVPDWQIQ 115

Query: 91  DSHPEENTATDKKEQLYQAINRLSEIEKAIIILY-LESYEYKEIAAVIGISESNVGVKIN 149
           D+   E++  D    L + I RL E  + + +L+ +E + ++E+A+++GIS        +
Sbjct: 116 DA--PEHSQNDDGLLLDRLIVRLPERARLVFVLFAVEGFSHEEVASLLGISTGTSKAHYH 173

Query: 150 RIKKQLIKQL 159
           R  ++L+K++
Sbjct: 174 R-ARELMKEM 182