Pairwise Alignments

Query, 164 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 170 a.a., sigma-70 family RNA polymerase sigma factor from Dyella japonica UNC79MFTsu3.2

 Score = 94.7 bits (234), Expect = 7e-25
 Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 1/152 (0%)

Query: 5   FIELINQYQGILQKICNIYFYQHPFREDYYQEILIRLWKAYPKF-KQESTVSTWLYRVTL 63
           F + + +++ ++ K+ ++Y      R D  QEI ++LW+A+P + ++ +  STWLYR+ L
Sbjct: 10  FEQRLREHRRLIAKVASVYAAGAEDRRDLEQEICVQLWRAFPGYDERRARFSTWLYRIAL 69

Query: 64  NTAIDLVRKESVQPVYKELSTQEYAIHDSHPEENTATDKKEQLYQAINRLSEIEKAIIIL 123
           N AI  VR  +      E     +       E     ++   LY  I +L  + +A+I+L
Sbjct: 70  NVAISQVRSSAAGAGRLEPLQPHHLDTIGADEAPERDERLVALYAFIGQLEPLNRALILL 129

Query: 124 YLESYEYKEIAAVIGISESNVGVKINRIKKQL 155
           YLE   Y EIA V+GISE+NV  K+ RIK+ L
Sbjct: 130 YLEDRSYAEIAEVLGISETNVATKLGRIKQTL 161