Pairwise Alignments

Query, 164 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 166 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

 Score = 79.0 bits (193), Expect = 4e-20
 Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 2/132 (1%)

Query: 24  FYQHPFREDYYQEILIRLWKAYPKFKQESTVSTWLYRVTLNTAIDLVRKESVQPVYKELS 83
           F + P + D  QE+ + LW+A P F+ ES   T+ +RV  N A+   R E  + +   + 
Sbjct: 26  FAEAPDQHDLLQELTVALWRARPSFRAESAAGTFAHRVAHNAALTWKRGEVRRRLRGVVV 85

Query: 84  TQEYAIHDSHPEENTATDKKEQLYQAINRLSEIEKAIIILYLESYEYKEIAAVIGISESN 143
             E    D+  +   A    E+LY AI +L  +E+++I+L L+   Y EIA + G+SE+N
Sbjct: 86  EGELLTRDAGTDPQGAL--LERLYAAIRQLPPVERSLILLSLDGVGYAEIARLHGLSETN 143

Query: 144 VGVKINRIKKQL 155
           VG ++ RI++++
Sbjct: 144 VGARLTRIRQRV 155