Pairwise Alignments

Query, 164 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella sp. ANA-3

 Score = 56.6 bits (135), Expect = 2e-13
 Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 8   LINQYQGILQKICNIYFYQHPFREDYYQEILIRLWKAYPKFKQESTVSTWLYRVTLNTAI 67
           L+ +YQ  +  + + Y        D  QE  I+ ++A P F+ ES   TWLYR+ +NTA 
Sbjct: 25  LVLKYQSKVVSLISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYRIAVNTAK 84

Query: 68  DLVRKESVQPVYKELSTQEYAIHD--------SHPEENTATDK-KEQLYQAINRL-SEIE 117
           + +  +  +    ++  ++   ++        + PE    +D+ K+ +++ +  L  E+ 
Sbjct: 85  NYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPERLMLSDEIKKVVFETLETLPEELR 144

Query: 118 KAIIILYLESYEYKEIAAVIGISESNVGVKINRIKKQLIKQL 159
            AI +  L+   Y++IA ++      V  +I R ++ + K+L
Sbjct: 145 MAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRAREAIDKKL 186