Pairwise Alignments

Query, 420 a.a., putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 281 a.a., N-acetylmuramoyl-L-alanine amidase AmiA from Pantoea sp. MT58

 Score =  107 bits (266), Expect = 6e-28
 Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 16/236 (6%)

Query: 48  VVVIDAGHGGHDPGAIGKI-SKEKNINLNVALKLGNLIKKNCDDVKVIYTRSRDVFIPLD 106
           +V+ID GHGG D GA+G+  S+EK+I L +A  +   ++ +   ++V  TR  D FIPL 
Sbjct: 54  IVMIDPGHGGIDSGAVGEEGSEEKHIVLEIAGNVQRQLQSH-PRIEVRLTRDSDHFIPLY 112

Query: 107 RRAEIANNAKADLFISVHTNALAKNRTAKGASTWTLGLAKSDANLE--VAKRENSVILYE 164
           +R EIA+   ADLF+S+H +    +  A GAS + L    + +++   +++REN      
Sbjct: 113 QRVEIAHQHGADLFMSIHADGFT-SPDASGASVFALSNRGASSSMARYLSQRENDA---- 167

Query: 165 SDYQTRYAGFNPNSAESY---IIFEFMQDKYMEQSVHLASLVQKQFRHTCKRVDRGVHQA 221
                +  G      + Y   I+F+ +Q   ++ S+ L   V  Q R       +   QA
Sbjct: 168 ----DKLGGVKAQQQDHYLQQILFDLVQTDTIKNSLTLGKHVLDQIRPVHHLHSQHTEQA 223

Query: 222 GFLVLKASAMPSILVELGFISTPEEERYLNSEAGANTMAKGIYHAFLNYKREQEIR 277
            F VLK+ ++PS+LVE  FI+ P EE+ L + A    +A  I    +NY  E + R
Sbjct: 224 AFAVLKSPSIPSVLVETSFITNPREEQLLGTTAFRQKIASAIASGIVNYFDEFDRR 279