Pairwise Alignments

Query, 420 a.a., putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 414 a.a., N-acetylmuramoyl-L-alanine amidase from Pantoea sp. MT58

 Score =  117 bits (292), Expect = 8e-31
 Identities = 88/233 (37%), Positives = 124/233 (53%), Gaps = 19/233 (8%)

Query: 45  KDFVVVIDAGHGGHDPGAIGKI-SKEKNINLNVALKLGNLIKKNCDDVKVIYTRSRDVFI 103
           +  +++ID GHGG DPGA GK  ++EK+I L +  +L  LI K   ++K   TR+ DVFI
Sbjct: 184 RPIIIMIDPGHGGEDPGAHGKYKTREKDIVLKIGRRLKALIDKE-SNMKAYMTRNEDVFI 242

Query: 104 PLDRRAEIANNAKADLFISVHTNALAKNRTAKGASTWTLGL--AKSDANLEVAKRENSVI 161
           PL  R   A   +ADLF+S+H +A   +R A+G+S + L    A S A   +A+ +N   
Sbjct: 243 PLRVRVAKARKQRADLFVSIHADAFT-SRAARGSSVFALSTSGATSAAARFLAQTQN--- 298

Query: 162 LYESDYQTRYAGFNPNSAESYIIFEFMQDKYMEQSVHLASLVQKQFRHTCKRVD----RG 217
             ESD      G    S + Y+    M D    Q++H +    K+  H   R++    R 
Sbjct: 299 --ESDL----IGGVSKSGDRYLDHT-MFDMVQRQTIHDSLKFGKEVLHRMGRINHLHKRT 351

Query: 218 VHQAGFLVLKASAMPSILVELGFISTPEEERYLNSEAGANTMAKGIYHAFLNY 270
           V QAGF VLKA  +PSILVE  FIS  EEER L +    + +A+ I      Y
Sbjct: 352 VDQAGFAVLKAPDIPSILVETAFISNVEEERKLRTTRYQHQVAEAILDGIKAY 404