Pairwise Alignments

Query, 420 a.a., putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 556 a.a., N-acetylmuramoyl-L-alanine amidase AmiB from Pantoea sp. MT58

 Score =  117 bits (293), Expect = 9e-31
 Identities = 90/284 (31%), Positives = 137/284 (48%), Gaps = 21/284 (7%)

Query: 48  VVVIDAGHGGHDPGAIGKIS-KEKNINLNVALKLGNLIKKNCDDVKVIYTRSRDVFIPLD 106
           +V IDAGHGG DPGAIG+   KEKN+ + +A KL  L+  N    K + TR  D FI + 
Sbjct: 186 IVAIDAGHGGQDPGAIGQRGLKEKNVTIAIARKLRVLLN-NDPMFKGVLTRDGDYFISVM 244

Query: 107 RRAEIANNAKADLFISVHTNALAKNRTAKGASTWTLGLAKSD---ANLEVAKRENSVILY 163
            R+++A  A A++ +S+H +A A +  A GAS W L   +++   AN    K + S +L 
Sbjct: 245 GRSDVARKANANVLVSIHADA-APSHAATGASVWVLSNRRANNEMANWLEQKEKQSELLG 303

Query: 164 ESDYQTRYAGFNPNSAESYIIFEFMQDKYMEQSVHLASLVQKQFRHTCKRVDRGVHQAGF 223
            +      +  +P  +++ +  +F   + +   +  A  V +Q R       R    A  
Sbjct: 304 GAGDLLANSQADPYLSQAVLDLQFGHSQRVGYDI--AQKVLQQLRSVTSLHKRLPEHASL 361

Query: 224 LVLKASAMPSILVELGFISTPEEERYLNSEAGANTMAKGIYHAFLNY--------KREQE 275
            VL++  +PS+LVE GFIS   EER L S A  + +A+ IY     Y          ++E
Sbjct: 362 GVLRSPDIPSLLVETGFISNSSEERLLGSSAHQDKIAQSIYRGLRTYFLAHPLQSIPKEE 421

Query: 276 IRLTGASKTIIPTEEPATSAPE-----QRELMAEASTTPATATK 314
            R  G+S  +     PAT  P+     QR  +    T    A K
Sbjct: 422 NRPLGSSPAVSVASNPATGVPQYTGVTQRHTVTRGETLSGIAAK 465