Pairwise Alignments

Query, 420 a.a., putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 526 a.a., N-acetylmuramoyl-L-alanine amidase from Burkholderia phytofirmans PsJN

 Score =  117 bits (294), Expect = 6e-31
 Identities = 85/228 (37%), Positives = 115/228 (50%), Gaps = 16/228 (7%)

Query: 49  VVIDAGHGGHDPGAIGKISK-EKNINLNVALKLGNLIKKNCDDVKVIYTRSRDVFIPLDR 107
           V ID GHGG DPGAIG     EK++ L++A KL   I     +++ + TR  D F+PL+ 
Sbjct: 296 VAIDPGHGGEDPGAIGGSGTYEKHVALDIAKKLRAKIDAQ-PNMRAMMTRDADFFVPLNV 354

Query: 108 RAEIANNAKADLFISVHTNALAKNRTAKGASTWTLGL--AKSDANLEVAKRENSVILYES 165
           R + A    ADLF+S+H +A      AKG+S + L    A S A   +A +ENS      
Sbjct: 355 RVQKARRVGADLFVSIHADAFT-TPDAKGSSVFALSEHGATSAAARWMANKENS------ 407

Query: 166 DYQTRYAGFNPNSAESYI---IFEFMQDKYMEQSVHLASLVQKQFRHTCKRVDRGVHQAG 222
                  G N  SA++ +   +F+      +  S+   + V K+     K     V QAG
Sbjct: 408 --SDEIGGINIKSADATVNRALFDMSTTAQIRDSMRYGNFVLKEIGGINKLHKGSVEQAG 465

Query: 223 FLVLKASAMPSILVELGFISTPEEERYLNSEAGANTMAKGIYHAFLNY 270
           F VLKA  +PSILVE  FIS P+EER LN +A    MA  I      Y
Sbjct: 466 FAVLKAPDIPSILVETAFISNPDEERRLNDDAYREKMADAIMTGIKRY 513