Pairwise Alignments

Query, 1042 a.a., cation efflux system protein, AcrB/AcrD/AcrF family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1056 a.a., heavy metal efflux pump (cobalt-zinc-cadmium) from Pseudomonas stutzeri RCH2

 Score =  612 bits (1578), Expect = e-179
 Identities = 348/1052 (33%), Positives = 609/1052 (57%), Gaps = 39/1052 (3%)

Query: 1    MLNKIIHYSLHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEANGMAAEE 60
            M  +II +S+ +R +V+ A + +   G Y+     +D  PD+    V I T A G +  E
Sbjct: 1    MFERIIRFSIEHRWLVMLAVLGMAALGAYSYQKLPIDAVPDITNVQVQINTAAPGYSPLE 60

Query: 61   VEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAVVSES 120
            VEQ +T+P+ET + G   + + RS S  G S + V F+ GTDIY ARQ+V+E+L    + 
Sbjct: 61   VEQRITYPLETVMAGLPKLEQTRSLSRYGLSQITVIFEEGTDIYFARQLVNERLGGAKDQ 120

Query: 121  LPVNVGKPTLGPQSSILGEMLIVGLTADSTSM---------LDLRTIADWTIRPRLLSTG 171
            LP  V  PTLGP S+ LGE+    + A+  +           DLR I DW I+P++ +  
Sbjct: 121  LPDGV-TPTLGPISTGLGEIYFWTVEAEEGATKSDGTPYTPADLREIQDWIIKPQVRNVP 179

Query: 172  GVAQVAVLGGDIKEYQIQLDPERMRHYGVSMGEVMAVTQDMNLNANGGVLYEFGNEYIAR 231
            GV ++  +GG  KEYQI  +P+ +R +G+++ +++   +  N N   G + + G +Y+ R
Sbjct: 180  GVTEINTIGGYAKEYQIAPNPDTLRSFGLTLQDLIEAVEQNNNNLGAGYIEKRGEQYLVR 239

Query: 232  GVLSTPKVEELGKAVVKTVNNFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQP 291
                   VE++   ++  V+  PV + D+A V++G K  + G A+E G+  VL T     
Sbjct: 240  APGQMQSVEDIRDTLISNVDGTPVRIRDVATVEVG-KELRTGAATENGREVVLGTAFMLI 298

Query: 292  ATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIV 351
              ++  ++  ++  ++++  +LP  VK  T ++ ++  ++ +I  VKK+L EG I VV++
Sbjct: 299  GENSRVVSRAVDDKMKEINLSLPEGVKAIT-VYDRTVLVDKAISTVKKNLTEGAILVVVI 357

Query: 352  LFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVE 411
            LFLFL N+R  +++ + +PLS+L +   +    ++ N MSLG  A+  G ++D A+V VE
Sbjct: 358  LFLFLGNIRAAILTALVIPLSMLFTFTGMVANQVSANLMSLG--ALDFGIIIDGAVVIVE 415

Query: 412  NVYKRL-----RENRQKAEAERFSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGM 466
            N  +RL        R    +ER   L  VF A+KEVR P+L   LII++ ++P+F L+G+
Sbjct: 416  NCVRRLAHAQSHHGRALTLSER---LHEVFAAAKEVRRPLLYGQLIIMIVYLPIFALTGV 472

Query: 467  EGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKESFVARWMKGIYEKA 526
            EG+M  P+    + ALF + ++++T  P   +  +G   T KE   +F+ R  K  Y  A
Sbjct: 473  EGKMFTPMAFTVVTALFGAIILSVTFVPAAVALFIGKRVTEKE---NFLIRNAKRAYAPA 529

Query: 527  LTWVLAHKRVTLGSTIVLFLIALGVFFTLGRSFLPSFNEGSFTINISSLPGISLEESNKM 586
            L  V+A+K   L   +V+ +++  V   +G  F+PS NEG F I    +P  SL +S +M
Sbjct: 530  LDAVMANKPAVLTFAVVVVILSGLVGSRMGSEFVPSLNEGDFAIQALRVPATSLSQSVEM 589

Query: 587  GHRAEELLLT-IPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKD------RPRSELV 639
              + E  L+   PEI+ +  +TG AE+   A+  N+S+     + ++      + R++L+
Sbjct: 590  QQQLERKLMDEFPEIERIFARTGTAEVASDAMPPNISDGYVMLKPQEQWPDPGKSRNQLL 649

Query: 640  AEVREKLGTITGANIEIGQPISHRIDAMLSGTKANIAIKLFGDDLNKMFSLGNQIKGAIS 699
            +EV+     + G N E  QPI  R + ++SG +A +A+K++GDD++ + S   ++   + 
Sbjct: 650  SEVQASAAELPGNNYEFSQPIQLRFNELISGVRAAVAVKIYGDDMDVLNSTAAEVSEVLG 709

Query: 700  DIPGIADLNVEQQIERPQLKIQPKREMLAKFGITLPEFSEYVNVALAGKVISQVYEQGKS 759
             +PG +++ VEQ    P L I   R+ +A++G++L    + V VA+ G+    +++  + 
Sbjct: 710  QVPGASEVTVEQTTGLPMLTIDIDRDQIARYGLSLDTVQQAVAVAIGGREAGTLFQGDRR 769

Query: 760  FDLIVKVKDDARDEMEKIRNLMVD-----TNDGRKVPLNYVAEVVSSMGPNTINRENVKR 814
            FD++V++ D+ R ++  I  L +       +    +PL  VA +  + GPN I+RE  KR
Sbjct: 770  FDIVVRLPDEIRSDLAAIERLPIALPRELNSTISYIPLGEVATLDLAPGPNQISREEGKR 829

Query: 815  KIVISANVADRDLRSVVNDIQKQVDATIQLPEGYHIEYGGQFESEQAASRVLALTSFMSI 874
            +IV+SANV  RD+ S V++ ++++ A + +P GY I++GG FE  ++A++ L +   +++
Sbjct: 830  RIVVSANVRGRDIGSFVSEAEQKIQAQVDIPAGYWIDWGGTFEQLESATKRLQIVVPVAL 889

Query: 875  VIIFLLLYHEFRSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRN 934
            +++F+LL+  F +VK+  ++   +P AL GG+ AL +    +SI A +GFI+L G+A  N
Sbjct: 890  LLVFILLFMMFNNVKDGLLVFTGIPFALTGGIVALWLRDIPLSISAGVGFIALSGVAVLN 949

Query: 935  GMLLISHYNHLQQVEGLNVYDSVVQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQ 994
            G+++IS    L++ +GL +  ++ +G+L RL P+LMTAL ++L  +P+AL     G E+Q
Sbjct: 950  GLVMISFIRSLRE-QGLPLDTAIREGALTRLRPVLMTALVASLGFVPMALNVG-TGAEVQ 1007

Query: 995  SPMAKVILGGLLTSTFLNGFIVPIVYLMMHRQ 1026
             P+A V++GG+L+ST L   ++P++Y M HR+
Sbjct: 1008 RPLATVVIGGILSSTVLTLLVLPLLYQMAHRR 1039