Pairwise Alignments

Query, 1042 a.a., cation efflux system protein, AcrB/AcrD/AcrF family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1017 a.a., CzcA family heavy metal efflux protein (RefSeq) from Shewanella loihica PV-4

 Score =  563 bits (1450), Expect = e-164
 Identities = 327/1032 (31%), Positives = 577/1032 (55%), Gaps = 20/1032 (1%)

Query: 1    MLNKIIHYSLHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEANGMAAEE 60
            ML  +I +SL  RL VL  A +L+ AG    +   +D FPD++   V I+ +A GM  EE
Sbjct: 1    MLTSVIRFSLTQRLFVLIVAAILMAAGGKAWLAIPLDAFPDISPTQVKIILKAPGMTPEE 60

Query: 61   VEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAVVSES 120
            +E  +T P+ET + G      +RS++    S + ++F  GTDIY ARQ VSE+LA V +S
Sbjct: 61   IEAQITVPIETELLGIPNQAILRSTTKYAISDITLDFAEGTDIYWARQQVSERLAAVWDS 120

Query: 121  LPVNVGKPTLGPQSSILGEMLIVGLTADSTSMLDLRTIADWTIRPRLLSTGGVAQVAVLG 180
             P  V    + P S+ L E+ +  L   + S+++ R + +W +RP L +  GVA V +LG
Sbjct: 121  FPEGVSGG-VAPMSTPLSEIFMFSLENPNLSLMERRQLLEWEVRPLLRTVPGVADVNILG 179

Query: 181  GDIKEYQIQLDPERMRHYGVSMGEVMAVTQDMNLNANGGVLYEFGNEYIARGVLSTPKVE 240
            G  K + I  +P  M   G+   ++    +D N N   G L    +  I R       ++
Sbjct: 180  GYAKSFSISPNPAAMAAAGIGFADLQQAIKDNNHNEGAGKLTIGTDTIIVRAEGRIDDID 239

Query: 241  ELGKAVVKTVNNFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQPATSTLELTD 300
            ELG+ VVK  +     L+D+A+++IG  A + G  ++ G       +     T+T ++ D
Sbjct: 240  ELGQLVVKADDAKVYRLKDLAEIQIGHLA-RYGAVTKDGDETAEALIIALKDTNTAQVVD 298

Query: 301  KLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLANVR 360
             ++  L  +Q +LP    ++T  + ++  I ++I  +  +LFE  + V+++L LFL NVR
Sbjct: 299  GIKQKLAQIQTSLPEGSVINT-FYDRANLINTAIDTISSALFEAVLLVIVLLALFLGNVR 357

Query: 361  TTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLREN 420
              L+  ++LPL+ L++ L +    L+ N MSLGG+ IAIG LVD ++V VEN+  ++   
Sbjct: 358  AALVVSLSLPLAALMTFLLMDLFDLSANLMSLGGLVIAIGMLVDSSVVVVENMVNQI--- 414

Query: 421  RQKAEAERFSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGIAFIV 480
               A  +R   L ++F A+K+V +P+++ T+I+++ F PL  L+G+EG++  P+ +  + 
Sbjct: 415  ---ASKQRLPRLHLIFRATKDVAIPVVSGTIIVIIVFSPLLSLTGLEGKLFTPVAVTIVF 471

Query: 481  ALFASTVVALTLTPVLCSYLLGSNKTNKELKESFVARWMKGIYEKALTWVLAHKRVTLGS 540
            A+ +S V+ALT+ PV+ SYL+      K  +E      +K  Y  +L      K+  + +
Sbjct: 472  AMLSSLVLALTVIPVIASYLVNE----KAAQEPRAIEKLKAAYLGSLKRTFEAKKGFMLT 527

Query: 541  TIVLFLIALGVFFTLGRSFLPSFNEGSFTINISSLPGISLEESNKMGHRAEELLLT-IPE 599
               L +++LG+F  +G++F+P+ +EG   + +   P ISLE S  +  + ++ LL+ +PE
Sbjct: 528  AFSLLIVSLGLFSLVGKTFMPTLDEGDIILQLEKSPSISLEASIAIDKQIQQTLLSKVPE 587

Query: 600  IQTVARKTGRAELDEHALGVNVS----EIEAPFELKDRPRSELVAEVREKLGTITGANIE 655
            I+ +  +TG  E+    +G+N +    E+    E +   ++EL+  +R +L    G N  
Sbjct: 588  IKQMVARTGADEIGLDPMGLNETDVFLELAPRSEWRFDTKAELIEAIRGELLQYAGVNFN 647

Query: 656  IGQPISHRIDAMLSGTKANIAIKLFGDDLNKMFSLGNQIKGAISDIPGIADLNVEQQIER 715
              QPI  R+  ML+G+  ++AIK+FG D++ + +L  +I+  +S   G  D+ +      
Sbjct: 648  FTQPIQMRVSEMLTGSIGDVAIKVFGTDIDTLGTLTGEIQQLVSATNGSVDVKMSLIEGS 707

Query: 716  PQLKIQPKREMLAKFGITLPEFSEYVNVALAGKVISQVYEQGKSFDLIVKVKDDARDEME 775
            P + +    E+   FG++  EF+ Y+   L G  +++V +  K   +++   +     + 
Sbjct: 708  PFINLTLDNELARGFGMSTMEFARYLKSQLEGVAVTEVLQGKKRTPVLIASGEGKLGSIN 767

Query: 776  KIRNLMVDTNDGRKVPLNYVAEVVSSMGPNTINRENVKRKIVISANVADRDLRSVVNDIQ 835
            +++  ++   D     L  VA++    GP  I RE   R  VI+ NV  RD+   V ++ 
Sbjct: 768  ELKQQLLVMPDHSLRRLTDVAKLSYKEGPILIEREQGDRFSVITTNVEGRDIVGFVEELN 827

Query: 836  KQVDATIQLPEGYHIEYGGQFESEQAASRVLALTSFMSIVIIFLLLYHEFRSVKESGVIL 895
             ++   I+LP GY + +GG+FE++Q A+  L L   +++ +I L+L+  F S+ ++G+IL
Sbjct: 828  AKIGEQIKLPAGYSVSFGGEFENQQRATNNLLLVIPIAMALITLILFTTFGSLSKAGLIL 887

Query: 896  LNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHYNHLQQVEGLNVYD 955
             N+P A++GG+ +L ++   +S+PA +GFI+L G+A  NG++++S+Y   + +   ++  
Sbjct: 888  ANVPFAMMGGIVSLYLSGEYLSVPASVGFIALLGVAVLNGVVMVSYYEQTRHLFS-DLLT 946

Query: 956  SVVQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILGGLLTSTFLNGFI 1015
             V QG++ RL PILMTA ++   L+PL      PG EIQ P+A V++GGLLTST    ++
Sbjct: 947  RVEQGAMRRLRPILMTATTAMFGLMPLVFATG-PGAEIQKPLAIVVIGGLLTSTITTLYL 1005

Query: 1016 VPIVYLMMHRQR 1027
            +PI+Y  + ++R
Sbjct: 1006 LPILYYWLEKRR 1017