Pairwise Alignments

Query, 1042 a.a., cation efflux system protein, AcrB/AcrD/AcrF family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1076 a.a., CzcA family heavy metal efflux protein (RefSeq) from Shewanella loihica PV-4

 Score =  620 bits (1598), Expect = 0.0
 Identities = 378/1075 (35%), Positives = 595/1075 (55%), Gaps = 57/1075 (5%)

Query: 1    MLNKIIHYSLHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEANGMAAEE 60
            ML K+I  ++ NRL+V  A +  ++A         +D FPD+    V + T A G+AAEE
Sbjct: 1    MLQKLIDSAIRNRLLVALALLCGVVASVAMLPKLNLDAFPDVTNVQVTVNTAAEGLAAEE 60

Query: 61   VEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAVVSES 120
            VE+L+++PVE+A+     V  VRS S  G S+V V F  GTDIY ARQ V E+L    E 
Sbjct: 61   VEKLISYPVESAMYALPSVTEVRSLSRTGLSIVTVVFAEGTDIYFARQQVFEQLQAAREM 120

Query: 121  LPVNVGKPTLGPQSSILGEMLIVGLTADSTSMLD---LRTIADWTIRPRLLSTGGVAQVA 177
            +P  VG P +GP +S LG++    L A   S +D   LR++ D+ ++  ++  GGV  V 
Sbjct: 121  IPDGVGVPEIGPNTSGLGQIYQYILRATPESGIDAAELRSLNDYLVKLIMMPVGGVTDVL 180

Query: 178  VLGGDIKEYQIQLDPERMRHYGVSMGEVMAVTQDMNLNANGGVLYEFGNEYIARGVLSTP 237
              GG++++YQ+Q++P ++R YG+SM +V    +  N NA G  + +   + + RG    P
Sbjct: 181  SFGGEVRQYQVQIEPNKLRSYGLSMAQVTQALESNNRNAGGWFMDQGQEQLVVRGYGLLP 240

Query: 238  KVEELGKAVVKTV-----NNFPVTLEDIADVKIGPK----APKLGTASERGKPAVLMTVT 288
               E G A +  +        PV + DIA V  G +    A  +    + G P  L  V 
Sbjct: 241  -AGEAGLAAIAQIPLTEAGGTPVRVADIAKVDFGAEIRVGAVTMTRRDDAGTPKALGEVV 299

Query: 289  -----KQPATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFE 343
                 K+   +T    D + A    +++ LP  V      + Q+  +  ++  V+ +L  
Sbjct: 300  AGVVLKRMGANTKATIDDISARTAMIEQALPKGVSFEV-FYDQADLVNKAVETVRDALLM 358

Query: 344  GGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLV 403
              +F+V++L LFL N+R TL+ L+++P+S+ ++++ + Y G++ N MSLGG+A+AIG LV
Sbjct: 359  AFLFIVVILALFLVNLRATLLVLLSIPVSIGLALMVMAYFGMSANLMSLGGLAVAIGMLV 418

Query: 404  DDAIVDVENVYKRLRENRQK-----------------------AEAERFSTLEVVFNASK 440
            D ++V VEN++K L +  ++                        E ER      V  A+K
Sbjct: 419  DGSVVMVENIFKHLTQPDRRHFDQAKARASGESDPYHGEEDGLGEGERSGIALRVMLAAK 478

Query: 441  EVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYL 500
            EV  PI  +T II+V F PLF L G+EG++  P+ ++ I+A+ A+  VAL   P L  YL
Sbjct: 479  EVCSPIFFATAIIIVVFAPLFALEGVEGKLFQPMAVSIILAMVAALFVALIGVPALAVYL 538

Query: 501  LGSNKTNKELKESFVARWMKGIYEKALTWVLAHKRVTLGSTIVLFLIALGVFFTLGRSFL 560
                K    L+ES V + ++ +Y   L+  +   ++ L + + LF I++ +   LG  F+
Sbjct: 539  F---KRGVTLRESPVLKPVEALYRHLLSATMGRPKLVLLTAVTLFGISMALLPRLGTEFV 595

Query: 561  PSFNEGSFTINISSLPGISLEESNKMGHRAEELLLTIPEIQTVARKTGRAELDEHALGVN 620
            P   EG+  + ++  P  SL  S  +  + E +L+T PE+     + G  EL        
Sbjct: 596  PELEEGTINLRVTLAPTASLSTSLDVAPKLEAMLMTFPEVDYALSRIGAPELGGDP--EP 653

Query: 621  VSEIEAPFELKD-------RPRSELVAEVREKLGTITGANIEIGQPISHRIDAMLSGTKA 673
            VS IE    LK          R EL  ++ EKL    G      QPI+ R+D +LSG KA
Sbjct: 654  VSNIEIYIGLKPIEEWEHAETRLELQRKMEEKLSVFPGLLFTFSQPIATRVDELLSGVKA 713

Query: 674  NIAIKLFGDDLNKMFSLGNQIKGAISDIPGIADLNVEQQIERPQLKIQPKREMLAKFGIT 733
             +AIKLFG DL  + S G ++   +S I G  D+++EQ     QL ++PKR++LA++GI+
Sbjct: 714  QLAIKLFGPDLEVLSSKGQELSELVSGIEGAVDVSLEQVSGEAQLVVRPKRDLLARYGIS 773

Query: 734  LPEFSEYVNVALAGKVISQVYEQGKSFDLIVKVKDDARDEMEKIRNLMVDTNDGRKVPLN 793
            + E    V+  + G    QV +    +D+ V++    R   + + +L++   +G  V L 
Sbjct: 774  VDEVMSLVSQGIGGVSAGQVIDGNARYDINVRLASQYRSAPDALEDLLLSGVNGATVRLG 833

Query: 794  YVAEVVSSMGPNTINRENVKRKIVISANVADRDLRSVVNDIQKQVDATIQLPEGYHIEYG 853
             VA+VV  M P  I R++V+R++V+ ANV+ RD+ SVV DI   V     LP GY +  G
Sbjct: 834  EVADVVVEMAPPNIRRDDVQRRVVVQANVSGRDMGSVVKDIYAIVPQA-DLPPGYTVVVG 892

Query: 854  GQFESEQAASRVLALTSFMSIVIIFLLLYHEFRSVKESGVILLNLPLALIGGVFALVITT 913
            GQ+E++Q A + L L   +SI +I LLLY  F S+K+ G+I+ N+PLALIGGV AL ++ 
Sbjct: 893  GQYENQQRAQQKLMLVVPISIALIALLLYFSFGSIKQVGLIMANVPLALIGGVVALYVSG 952

Query: 914  GEVSIPAIIGFISLFGIATRNGMLLISHYNHLQQVEGLNVYDSVVQGSLDRLNPILMTAL 973
              +S+P+ IGFI+LFG+A  NG++L+   N  ++  G  +Y SV +G++ RL P+LMTAL
Sbjct: 953  TYLSVPSSIGFITLFGVAVLNGVVLVDSINQ-RRASGEALYTSVYEGTVGRLRPVLMTAL 1011

Query: 974  SSALALIPLALGGDLPGNEIQSPMAKVILGGLLTSTFLNGFIVPIVYLMMHRQRS 1028
            +SAL LIP+ L   + G+EIQ P+A VI+GGL +ST L   ++P +Y  ++  ++
Sbjct: 1012 TSALGLIPILLSSGV-GSEIQKPLAVVIIGGLFSSTALTLLVLPTLYRWLYETKA 1065