Pairwise Alignments

Query, 1042 a.a., cation efflux system protein, AcrB/AcrD/AcrF family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1055 a.a., heavy metal efflux pump, CzcA family from Sphingomonas koreensis DSMZ 15582

 Score =  579 bits (1493), Expect = e-169
 Identities = 353/1065 (33%), Positives = 607/1065 (56%), Gaps = 40/1065 (3%)

Query: 1    MLNKIIHYSLHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEANGMAAEE 60
            ML +II  S+  R  VL AA+LL+  G Y+    ++D  PD+    V + T A G +  E
Sbjct: 1    MLERIIRLSIRQRWAVLIAALLLVAVGIYSFGRLKIDAVPDITNVQVQVNTSAPGFSPME 60

Query: 61   VEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAVVSES 120
             EQ +T+PVETA+ G  G+   RS S  G S V V F  GT+IY ARQ+V+E+L    ++
Sbjct: 61   AEQRITYPVETALAGLPGLEFTRSVSRAGLSQVTVVFKDGTNIYFARQLVNERLQGARDA 120

Query: 121  LPVNVGKPTLGPQSSILGEMLIVGLTADSTSML---------DLRTIADWTIRPRLLSTG 171
            LP  + +P +GP ++ LGE+ +  L A   ++          DLRT+ DW +RP+L +  
Sbjct: 121  LPPGL-EPAMGPIATGLGEIFMYTLEAKQGAVKADGSRYTAEDLRTLHDWVVRPQLRNVP 179

Query: 172  GVAQVAVLGGDIKEYQIQLDPERMRHYGVSMGEVMAVTQDMNLNANGGVLYEFGNEYIAR 231
            GV +V  +GG  K++ I   P R+  YG+S+ ++ A  +  N N   G +   G++ I R
Sbjct: 180  GVTEVNSIGGYRKQFVIAPIPARLAAYGLSVTDLTAALEKNNSNVGAGYIERSGSQSIIR 239

Query: 232  GVLSTPKVEELGKAVVKTVNNFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQP 291
                     +L   +V      PV + D+ADV IG +  + G A++ G+  VL T+    
Sbjct: 240  VPGQASGQMDLSGIIVAYRQGTPVRVVDVADVSIGSEI-RQGAATKDGREVVLGTIYMLV 298

Query: 292  ATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIV 351
              +  E++  +   L+ + K+LPA V+  T ++ +S+ +E++IG V+K+L EG + V++V
Sbjct: 299  GENAREVSVAVAERLEVVNKSLPAGVRAVT-MYDRSKLVEATIGTVEKNLAEGALLVIVV 357

Query: 352  LFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVE 411
            LFL L N+R  LI+   +P++ L++I  +    ++ N MSLG  A+  G +VD A++ VE
Sbjct: 358  LFLLLGNIRAALITAAVIPVTFLMTITGMVAWDISGNLMSLG--ALDFGLIVDGAVIIVE 415

Query: 412  NVYKRLRE-----NRQKAEAERFSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGM 466
            N  +R  E     +R   + ERF   ++  +AS EV  P L    II + ++P+F L+G+
Sbjct: 416  NCLRRFGEAQHRLDRMLTKEERF---DIAASASAEVVKPSLFGIAIITIVYLPIFALTGV 472

Query: 467  EGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKESFVARWMKGIYEKA 526
            EG+   P+ I  ++AL A+ +++LT  P   +  + + K N+  KES   R  K  Y   
Sbjct: 473  EGKTFHPMAITVVLALTAAAILSLTFVPAAVATFV-TGKVNE--KESAAIRAAKRWYSPL 529

Query: 527  LTWVLAHKRVTLGSTIVLFLIALGVFFTLGRSFLPSFNEGSFTINISSLPGISLEESNKM 586
            + WVL  +   L   +VL  ++      LG  F+P  +EG   ++   +PG SL ++ +M
Sbjct: 530  IDWVLKARVAVLAGAVVLVALSGVAATRLGSEFIPQLDEGDIALHALRIPGTSLTQAVQM 589

Query: 587  GHRAEELLLTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKD------RPRSELVA 640
                E  +   PE++ V  K G A++    +  +V++     + +       +P+++LVA
Sbjct: 590  QSALENRIKRFPEVKDVFAKIGTADVATDPVPPSVADTFVIMKPRSEWPNPRKPKAQLVA 649

Query: 641  EVREKLGT-ITGANIEIGQPISHRIDAMLSGTKANIAIKLFGDDLNKMFSLGNQIKGAIS 699
            E+   +   + G+  E  QPI  R + +++G ++++AIK+ GDDL+++ +   ++ G ++
Sbjct: 650  EMNAAIQRDVPGSRYEFIQPIQMRFNELIAGVRSDVAIKIVGDDLDQLAAAAERVVGIVA 709

Query: 700  DIPGIADLNVEQQIERPQLKIQPKREMLAKFGITLPEFSEYVNVALAGKVISQVYEQGKS 759
             I G  D+  EQ    P ++I P R  L++ G+ + +    V+ A AG    Q++E  + 
Sbjct: 710  GIEGAQDVQAEQVTGLPFVEIIPDRLRLSQLGLNVADVQSVVSAATAGAGAGQIFEGDRR 769

Query: 760  FDLIVKVKDDARDEMEKIRNLMVDT-NDGR----KVPLNYVAEVVSSMGPNTINRENVKR 814
            FD++V++ +  R +   +  L V    +G      VPL+ VA +  + GPN I+RE+ KR
Sbjct: 770  FDIVVRLPEAMRQDRSILDRLPVPLPGEGGAVRGSVPLSEVATIRETTGPNQISREDGKR 829

Query: 815  KIVISANVADRDLRSVVNDIQKQVDATIQLPEGYHIEYGGQFESEQAASRVLALTSFMSI 874
            + V++ NV  RDL S + ++Q++V A  +LPEGY ++YGG FE  Q+AS+ L +   +++
Sbjct: 830  RAVVTTNVRGRDLGSFIAEVQQKVAAQAELPEGYWVDYGGTFEQLQSASQRLQIVVPLTL 889

Query: 875  VIIFLLLYHEFRSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRN 934
            ++IF LL+  F S K++G++   +PLAL GGV AL++     SI A +GFI+L G+A  N
Sbjct: 890  LLIFGLLFLLFGSFKDAGIVFSGVPLALTGGVAALLLRGIPFSISAGVGFIALSGVAVLN 949

Query: 935  GMLLISHYNHLQQVEGLNVYDSVVQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQ 994
            G++++S    L++ EG+++ D++ +G+L RL P+LMTAL ++L  +P+AL   + G+++Q
Sbjct: 950  GVVMLSFIRQLRE-EGMSLEDAIREGALTRLRPVLMTALVASLGFVPMALNVGI-GSDVQ 1007

Query: 995  SPMAKVILGGLLTSTFLNGFIVPIVYLMMHRQRSAGANSPCGVPA 1039
             P+A V++GG+++ST L   ++P +Y ++H +++   N P   PA
Sbjct: 1008 RPLATVVIGGIISSTILTLVVLPALYRIVHGRKAKDQN-PTTEPA 1051