Pairwise Alignments

Query, 380 a.a., multidrug efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 367 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  136 bits (342), Expect = 1e-36
 Identities = 107/351 (30%), Positives = 171/351 (48%), Gaps = 12/351 (3%)

Query: 38  VMTVSPTDRMISSAYSATIRGRQDIDIYPQVGGTLTKVSVTEGQRVKSGQTLFIIDQVPY 97
           VMT+      + +     I   +  ++  QV G L +   T+G  V  G  L+ ID   +
Sbjct: 8   VMTIEARPLAVMNELPGRIAATRVSEVRAQVSGILQERVFTQGTPVTKGDVLYRIDARLF 67

Query: 98  EAALQTAVANVESAKASLATAQLTYDSKEELYKENVVSAFDLSTAKNSLLAAKAQLAQAK 157
            A + +A A++  A+++L  A+     +E L K NV S      A  +L  A A +A A+
Sbjct: 68  RARVASAEASLARARSTLTNARNQMSRQESLRKSNVTSGAQYEAAVAALEQANADVAFAQ 127

Query: 158 AQEVSARNNLSYTVVKSPADGVVGTLPYRVGALVSSSIPEPLTTVSDNSDMYVYFSMTEN 217
           A    AR NL+YT V++P  G++G      GALV++   + L  +     +Y  F+ +  
Sbjct: 128 AALDEARINLAYTDVRAPISGIIGAALVTEGALVTADGSQNLALIQQIDPVYADFTQSAQ 187

Query: 218 QLLGLIRQYGSKDEALKSMPA-----IDLQLNDKSAYPEQGQIESISGVIDRSTGTVSLR 272
           QLL L R   + +E   + PA     ++L  +D S Y + G++   S  +D +TG V+LR
Sbjct: 188 QLLALRR---AVNEGKLAFPAPGEARVELLFDDDSVYSKPGRLLFASASVDATTGQVTLR 244

Query: 273 AVFPNKDGLLHSGGAGNV-VIPVQKTGALVIPQGATFEIQDKR-YVYKV-VDGKAQSSQV 329
           A FPN DG L  G    V V       A+ IPQ A    QD R  VY V  D  A + +V
Sbjct: 245 AEFPNSDGDLLPGMYVRVRVEQAVHQHAITIPQRAVLRTQDGRAQVYVVSADDTAVAREV 304

Query: 330 QVTRVNGGREFIVDEGLSPGDVIVAEGVGLLREGTPIKAKTAQASTTTTEN 380
           ++ +V    E++V+ GL  G+ +V +GV  +  G  + A+    + T  ++
Sbjct: 305 RLGQVQND-EWLVEAGLKAGERVVIDGVQKVVAGGKVAAEPWNPAATNQKS 354