Pairwise Alignments

Query, 380 a.a., multidrug efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 384 a.a., efflux RND transporter periplasmic adaptor subunit from Pantoea sp. MT58

 Score =  138 bits (348), Expect = 2e-37
 Identities = 108/377 (28%), Positives = 178/377 (47%), Gaps = 21/377 (5%)

Query: 7   KMKQGLLLLGCLVAA---AGC-----KQAPPTQMETGYEVMTVSPTDRMISSAYSATIRG 58
           +++QGL LLG ++     +GC     + APP   E     + + P  +  +  ++  +  
Sbjct: 5   RVRQGLTLLGMVLLITQLSGCDKGVAQNAPPPPPEVSAAPVLIKPVSQWDN--FNGRVEA 62

Query: 59  RQDIDIYPQVGGTLTKVSVTEGQRVKSGQTLFIIDQVPYEAALQTAVANVESAKASLATA 118
            Q + + P+V G +  V+  EG  VK GQ LF ID   Y AAL+ A A +  A++  + A
Sbjct: 63  VQSVQLRPRVSGYIDSVNYREGDEVKKGQVLFTIDDRSYRAALEQAKAELARARSQASLA 122

Query: 119 QLTYDSKEELYKENVVSAFDLSTAKNSLLAAKAQLAQAKAQEVSARNNLSYTVVKSPADG 178
           +      E+L     +S       +++   A+A +  A+A    A+ NL +T V +P DG
Sbjct: 123 RSESGRSEKLIGTQAISREAWEQRRSAASQAQADVLAAEAAVDMAQLNLDFTRVTAPIDG 182

Query: 179 VVGTLPYRVGALVSS-SIPEPLTTVSDNSDMYVYFSMTENQLLG--LIRQYGSKDEALKS 235
                    G LV++      LTT+     MYVYF + EN  L    + + G +  AL  
Sbjct: 183 RASRAQITAGNLVTAGDSASVLTTLVSQQQMYVYFDVDENTFLNYQAMARQGQQRHAL-- 240

Query: 236 MPAIDLQLNDKSAYPEQGQIESISGVIDRSTGTVSLRAVFPNKDGLLHSGGAGNVVIP-V 294
              +++ L  +  +P QG+I+     +  STGT+ +RA+  N+      G    V +P  
Sbjct: 241 --PVEIALVGEQGFPHQGKIDFTDNQLTASTGTIRMRALLDNQQRQFTPGLFARVRLPGS 298

Query: 295 QKTGALVIPQGATFEIQDKRYVYKV-VDGKAQSSQVQVTRVNGGREFIVDEGLSPGDVIV 353
            +  A++I   A    QD++YVY V  +GKAQ   +Q   +  G   IV  GL  GD ++
Sbjct: 299 AQFEAVLIDDKAVLTDQDRKYVYVVDGEGKAQRRDIQPGAMIDGLR-IVKSGLHAGDKVI 357

Query: 354 AEGV-GLLREGTPIKAK 369
             G+  +   G P+ A+
Sbjct: 358 IAGLQKVFMPGMPVTAQ 374