Pairwise Alignments

Query, 380 a.a., multidrug efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 424 a.a., MexE family multidrug efflux RND transporter periplasmic adaptor subunit from Burkholderia phytofirmans PsJN

 Score =  145 bits (367), Expect = 2e-39
 Identities = 118/383 (30%), Positives = 178/383 (46%), Gaps = 27/383 (7%)

Query: 11  GLLLLGCLVAAAGCKQAPPTQMETGYEVMTVSPTDRMISSAYSATIRGRQDIDIYPQVGG 70
           GL   G +   A    AP    E   +V TV         +YS  +   + +D+  QV G
Sbjct: 23  GLGTFGAIRVDASSPAAPTIVPEV--DVATVVQKTITDWQSYSGRLEAVEKVDVRSQVPG 80

Query: 71  TLTKVSVTEGQRVKSGQTLFIIDQVPYEAALQTAVANVESAKASLATAQLTYDSKEELYK 130
           T+  V+  +G  VK G TLF+ID  PY A +  A A + +A+A     Q  ++  + L  
Sbjct: 81  TIVSVNFKDGALVKKGDTLFVIDPRPYAAEVDRAEAQLAAAQARTGYTQSDWERAQRLIA 140

Query: 131 ENVVSAFDLSTAKNSLLAAKAQLAQAKAQEVSARNNLSYTVVKSPADGVVGTLPYRVGAL 190
           +N ++  D    +N+   A A L  A+A   +AR NL YT + +P  G V      VG +
Sbjct: 141 DNAIAKRDYDEKQNAAREASANLKAAQAALETARINLGYTKIVAPVSGRVSRAEITVGNV 200

Query: 191 VSS-SIPEPLTTVSDNSDMYVYFSMTENQLLGLIRQYGSKDEALKSMPAIDLQLNDKSAY 249
           +S+ +   PLTT+   S +Y  F   E   L    QY S+ +    +P ++L L D++ Y
Sbjct: 201 ISAGATAAPLTTLVSVSPIYASFDADEQTYL----QYLSRAKDGSKVP-VELGLADETGY 255

Query: 250 PEQGQIESISGVIDRSTGTVSLRAVFPNKDGLLHSGGAGNVVI-PVQKTGALVIPQGATF 308
              G IES+   +D S+GT+ +RA F N+DG L  G    V +   +   AL+I   A  
Sbjct: 256 SRSGVIESVDNRLDTSSGTIRVRARFDNQDGALIPGLYARVKVGGSEPHPALLIDDAAVG 315

Query: 309 EIQDKRYV----------YKVVDGKAQSSQVQVTRVNGG---REFIVDEGLS---PGDVI 352
             QDK++V          Y+ +D       ++V  V GG    + IV  G+    PGD +
Sbjct: 316 TDQDKKFVLVVDQNNHVAYRSIDVGGMQGNLRV--VKGGLKATDRIVVNGIQRVRPGDAV 373

Query: 353 VAEGVGLLREGTPIKAKTAQAST 375
            A  V +  +G P  A  AQ  T
Sbjct: 374 RAHMVPMTTDGDPNSAPLAQKQT 396