Pairwise Alignments

Query, 1065 a.a., multidrug resistance protein, AcrB/AcrD family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  676 bits (1743), Expect = 0.0
 Identities = 363/1028 (35%), Positives = 589/1028 (57%), Gaps = 11/1028 (1%)

Query: 4    RTFIERPVLSAVISITIVVVGIIGLFSLPVEQYPDIAPPTIMVSTTYYGASAETLQKSVI 63
            R FI+RP+ + VI+I +++ G++ + SLPV QYP+IAPPT+++S  Y GASA+TL+ SV 
Sbjct: 3    RFFIDRPIFAWVIAILVMLAGVLAIKSLPVSQYPNIAPPTVVISANYPGASAKTLEDSVT 62

Query: 64   APLEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSRATGQLPAEV 123
              +E+ + G++++ Y+ ST+   G   IT+ F    D D+A V VQN++  A   LP EV
Sbjct: 63   QVIEQRMTGLDNLRYINSTSDGFGNAEITLTFNAEADADIAQVQVQNKLQSAMPLLPQEV 122

Query: 124  TQVGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVGDLMIMGGEY 183
               GV  +K  +  L +    S D S  +N +++Y+  N++  + R++GVG++ + G  Y
Sbjct: 123  QAQGVRVNKSTSGFLMVLGFVSEDGSLTKNDIADYVGSNVQDPLSRVAGVGEITLFGAPY 182

Query: 184  SMRVWMKPDVMAQYKLIPSDITGVLAEQNIESATGSFGENS---NETYQYTMKYKGRLIT 240
            +MR+W+ P  + QY L   D+   + EQN + + G  G       +    T+  + RL T
Sbjct: 183  AMRIWLDPLKLTQYSLTTQDVIAAIREQNAQVSAGQLGGAPAVLGQELNATVSAQSRLET 242

Query: 241  PEEFGDIVIRSTDNGEVLKLKDIAEVQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEV 300
            PE+F  I+++S  NG  + L D+A V+LG +SY      +G P     +    G+NA + 
Sbjct: 243  PEQFRKIILKSDTNGAKVFLGDVARVELGAESYVVESFYNGRPAAGLAISLATGANALDT 302

Query: 301  NQNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDF 360
               + E + E++   P G+++     +  F+  SI  VV TL+EA++LV +++Y+FLQ+F
Sbjct: 303  ATRVREKIAEMKPFFPAGLDVVYPYDTTPFVKQSIEGVVHTLLEAVVLVFVIMYLFLQNF 362

Query: 361  RSTLIPLVGVIVSLIGTFAFMALAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDV 420
            R+TLIP + V V L+GTFA ++  GFSIN LT+FA+VL IG +VDDAI+VVE V+     
Sbjct: 363  RATLIPTIAVPVVLLGTFAILSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMQE 422

Query: 421  GYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISA 480
                   A+  +M  I+ A++   L   AVF+P++FM G++G  Y QF +T+  A+ +S 
Sbjct: 423  EGLGPVEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSV 482

Query: 481  INALTLSPALCALLLKPYINEDGTQKNNFAASFRKAFNSAFDILIEKYKNVVLIFIKRRW 540
            + AL L+PALCA +LKP        ++ F       FN +F+ +  +Y+  V   +KR  
Sbjct: 483  LVALILTPALCATMLKPLKPGHSHGQHGFFG----WFNRSFEKMTSRYEGSVAAILKRSA 538

Query: 541  LAWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNVSTAAGSSLTTTDEVMERIEK--R 598
               ++ +  VV   ++     T+ +PDEDQG++F  V     SS  +T +V+E+++K  R
Sbjct: 539  RVMAIYLALVVATGWIFMRMPTAFLPDEDQGILFAQVILPTNSSQESTVKVLEKMDKFFR 598

Query: 599  LMDIPQIKHVQKVAGYGLLAGQGSSFGMLILKLKPWDERPNDEDNVQAVIGQVYGRTADI 658
              +   +  V  VAG+   AG G + G+  + +K W  R  +  +V ++ G+     + I
Sbjct: 599  EDEKDNVNSVFSVAGFS-FAGMGQNMGIAFVGMKDWAVREGEGQDVFSLQGRAMMAFSQI 657

Query: 659  KDASVFAISPGMIPGYGMGNALELHMQDKMGGDINEFFTTTQQYLGVLNQRPEIAMAYST 718
            K+A VFA +P  +   G  N  + ++QDK G    +      Q LG+  Q P +      
Sbjct: 658  KEAFVFAFAPPAVIELGTANGFDFYLQDKNGQGHAKLLEARNQLLGMAAQNPNLVGVRPN 717

Query: 719  FDVRYPQWTVEVDAAKCKRAGITPDAVLSTLSGYYGGQYVSNFNRFSKVYRVMIQADPQF 778
                 P + +++D AK +  G+   +V S ++  +GG YV++F    +V +V +Q D ++
Sbjct: 718  GQEDAPMYQLDIDHAKLRALGVDISSVNSAIATAWGGSYVNDFIDRGRVKKVYVQGDAEY 777

Query: 779  RLDETSLDNAFVRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGD 838
            R+    L+  +VR +NGEM P S F T    +G+  L RFN   ++ +    A GYSTGD
Sbjct: 778  RMQPEDLNTWYVRNANGEMVPFSAFATGRWDFGSPRLERFNGLPAMNIQGATAPGYSTGD 837

Query: 839  AIKAVQETAVQSLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALYESFIIP 898
            A+K + E  V+ LP G+G ++ G++ EE         ++ +  L+++L+L+ALYES+ +P
Sbjct: 838  AMKDI-EKIVEQLPPGFGVEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWSVP 896

Query: 899  FAVLLSVPCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLTEYAAERRKAGMG 958
            FAV+L VP G++G+ L     GL N+++ Q GL+  +GL  K AIL+ E+A E  + G G
Sbjct: 897  FAVVLVVPLGIIGALLAMNGRGLSNDVFFQVGLLTTVGLATKNAILIVEFAKEYYEKGAG 956

Query: 959  LIASAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALL 1018
            LI + + A + RLRPILMT+L    G+ PL +S+GVG+    ++GTGV+GGM   T   +
Sbjct: 957  LIEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGAQNAIGTGVLGGMMSSTFLGI 1016

Query: 1019 FIVPTLFI 1026
            F VP  F+
Sbjct: 1017 FFVPLFFV 1024