Pairwise Alignments

Query, 1065 a.a., multidrug resistance protein, AcrB/AcrD family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1042 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella loihica PV-4

 Score =  705 bits (1819), Expect = 0.0
 Identities = 400/1037 (38%), Positives = 599/1037 (57%), Gaps = 14/1037 (1%)

Query: 6    FIERPVLSAVISITIVVVGIIGLFSLPVEQYPDIAPPTIMVSTTYYGASAETLQKSVIAP 65
            FI RP  + V+SI + + G++ L  +PV Q+P I PP+I V   + GA   T++ +V + 
Sbjct: 5    FINRPKFAIVLSIVLTLAGLLSLARMPVSQFPSIVPPSIEVFAVFPGADHNTIRNTVASV 64

Query: 66   LEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSRATGQLPAEVTQ 125
            +E+ INGVEDM Y+ S + N  T    V F  GTDPD A V VQNRV++A  +LP EV +
Sbjct: 65   IEQEINGVEDMIYIESKSNNDNTYLAYVTFAIGTDPDKAQVLVQNRVNKAMAKLPEEVKR 124

Query: 126  VGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVGDLMIMGGE-YS 184
             GVT  K   SIL   +  SP+ S+D  +LSNY S+NIK  +LR+ GVG + ++G + YS
Sbjct: 125  QGVTVEKVANSILMTVNTYSPNGSHDNLYLSNYASLNIKDALLRVKGVGKVQVIGEQNYS 184

Query: 185  MRVWMKPDVMAQYKLIPSDITGVLAEQNIESATGSFGE---NSNETYQYTMKYKGRLITP 241
            MRVW+ P+ MA   +  +D+   ++ QN   A G  GE   + N+ +QYT++ KGRL+  
Sbjct: 185  MRVWLNPEKMAAKAITANDVAAAISAQNTTVAAGKLGERPSSGNQVFQYTIQTKGRLVDV 244

Query: 242  EEFGDIVIRSTDNGEVLKLKDIAEVQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEVN 301
            EEF +I++R+ +    + LKD+A V+L  + Y+       +      ++Q  G+NA EV 
Sbjct: 245  EEFENIILRADNQAGFITLKDVARVELAAEQYSAMATYGKNESPILAIYQAPGANALEVA 304

Query: 302  QNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDFR 361
            + +   +E + +  P  +E      S  F+  S+ EV +TL  AI LV++V ++FLQ +R
Sbjct: 305  EGVRAEMERLSQRFPADMEHVISYDSTTFIEVSMDEVFETLYIAIGLVVVVTFLFLQSWR 364

Query: 362  STLIPLVGVIVSLIGTFAFMALAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDVG 421
            +TLIP + + VSLIGTF  MA  G  IN +++F L+L IG VVD AI+V+E V+      
Sbjct: 365  ATLIPSIAIPVSLIGTFVVMAAMGIDINTISMFGLILAIGVVVDAAIVVIENVERLMSEE 424

Query: 422  YRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISAI 481
            +  S  A+  AMK ++  +I S+LV +AVF PVSF  G  G  Y QFG+T++V+  IS +
Sbjct: 425  HLDSKAATSKAMKEVTAPLIASALVLLAVFGPVSFAPGLVGQMYQQFGVTISVSTVISTV 484

Query: 482  NALTLSPALCALLLKPYINEDGTQKNNFAASFRKAFNSAFDILIEKYKNVVLIFIKRRWL 541
             ALTL+PALCA L++   +E    +   A      FN   + L   Y + V  F KR  L
Sbjct: 485  VALTLTPALCAALMR---HEAPKTRGPLAW-----FNQFINRLTNGYVSSVGFFGKRLML 536

Query: 542  AWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNVSTAAGSSLTTTDEVMERIEKRLMD 601
            +  LL   +  ++ L +      +P EDQG   V+++    S+L  TD++++ +   +  
Sbjct: 537  SGVLLALLMGAIMLLGDNMPKGFIPAEDQGSFMVDMNLPEASALDRTDKMVDEMISEVSA 596

Query: 602  IPQIKHVQKVAGYGLLAGQGSS-FGMLILKLKPWDERPNDEDNVQAVIGQVYGRTADIKD 660
            +  +KHV    GY LL G  SS  GM+I+ L  W ER   E +  A++ QV       KD
Sbjct: 597  LEGVKHVVAAKGYSLLKGASSSNSGMMIVVLDDWSERQTAETSEFALVAQVQAIIDQNKD 656

Query: 661  ASVFAISPGMIPGYGMGNALELHMQDKMGGDINEFFTTTQQYLGVLNQRPEIAMAYSTFD 720
             +  A S   IPG G    L L ++D  G  + +       YL  LN   EIAMA++T+ 
Sbjct: 657  VTGMAFSMPAIPGLGNAGGLTLQVEDLSGRSVEQMAPALDGYLAALNDADEIAMAFTTYS 716

Query: 721  VRYPQWTVEVDAAKCKRAGITPDAVLSTLSGYYGGQYVSNFNRFSKVYRVMIQADPQFRL 780
               PQ  ++VD AK    G+  + V STLS   G  YV++F +F K Y+V +QA+  +R 
Sbjct: 717  ANVPQLYLDVDRAKAMALGVDLNEVNSTLSAMMGNMYVNDFTKFGKNYQVNLQAEQSYRS 776

Query: 781  DETSLDNAFVRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAI 840
             E  L+  +VR  +GEM  LS F T     G+++ +R+N+YN+  V A+PADGYS+G+AI
Sbjct: 777  QEKDLEQIYVRALSGEMVKLSSFATYKPLVGSDNTARYNLYNTAQVIAIPADGYSSGEAI 836

Query: 841  KAVQETAVQSLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALYESFIIPFA 900
             A+++ A  SLP+GY Y++ G+T +E Q   +  I+F +  L  YL L A YES++IP A
Sbjct: 837  AAMEQIADTSLPQGYAYEWTGMTYQELQAGDSAPILFALALLFTYLFLVAQYESWMIPLA 896

Query: 901  VLLSVPCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLTEYA-AERRKAGMGL 959
            ++L VP  L G+  F  + G   N+Y Q GL++LIG+ ++ AIL+ E+A   R + G+ +
Sbjct: 897  IILCVPTALFGALGFTALAGGSINLYTQVGLVLLIGMASRNAILIVEFAKVLREEKGLSI 956

Query: 960  IASAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALLF 1019
            + +A  A   RLR +LMTA + I G+ PL+++SG G+    +LG    GGM I T+    
Sbjct: 957  MDAAKQAIALRLRAVLMTAFSFILGVVPLVIASGAGSASRNALGIASFGGMLIATVIGCL 1016

Query: 1020 IVPTLFIAFQWLQERLR 1036
            +VP  FIA Q L+E  R
Sbjct: 1017 LVPICFIALQRLRELRR 1033