Pairwise Alignments

Query, 1065 a.a., multidrug resistance protein, AcrB/AcrD family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1040 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella loihica PV-4

 Score =  735 bits (1898), Expect = 0.0
 Identities = 395/1036 (38%), Positives = 615/1036 (59%), Gaps = 13/1036 (1%)

Query: 6    FIERPVLSAVISITIVVVGIIGLFSLPVEQYPDIAPPTIMVSTTYYGASAETLQKSVIAP 65
            FI RP  + VIS  + +VG+I +  L V ++P+IAPP + VST+Y GASA+ ++ ++  P
Sbjct: 6    FIHRPKFAFVISTVLTLVGLISIPILSVAEFPEIAPPQVSVSTSYSGASADIVKDTIAQP 65

Query: 66   LEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSRATGQLPAEVTQ 125
            +E  +NGVE M YM S + N G+ S+ V F  GTD DMA V VQNRV +A  +LP EV +
Sbjct: 66   IEAEVNGVEGMLYMQSKSANDGSYSLNVTFDVGTDADMAQVKVQNRVQQAMPRLPEEVKR 125

Query: 126  VGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVGDLMIMGG-EYS 184
             GV   K+  +IL + +L SP++++D  F++NY  +N+K  + R +GV  + ++G  +Y+
Sbjct: 126  QGVKVEKQSPNILMVVNLVSPNETFDSLFITNYAGLNVKDALARQNGVSKVQVIGALDYA 185

Query: 185  MRVWMKPDVMAQYKLIPSDITGVLAEQNIESATGSFGE---NSNETYQYTMKYKGRLITP 241
            +R+W+ P+ MA + +  SD+   L EQNI+ A G  G    +  + +QYT++ KGRL  P
Sbjct: 186  IRIWLDPNQMASFGVTASDVIAALREQNIQVAAGRIGAAPVDPQQQFQYTLQTKGRLKDP 245

Query: 242  EEFGDIVIRSTDNGEVLKLKDIAEVQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEVN 301
            EEFG ++IR+  +G  + + D+A V+LG  +Y   G ++  P     ++Q   +NA EV 
Sbjct: 246  EEFGRVMIRANPDGSKVIVSDVARVELGSQTYDAQGKLNNKPSAIIAIYQAPDANALEVA 305

Query: 302  QNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDFR 361
            + I   ++ +    P  +E   +  + +F+  SI EVV+TL  ++ LV+ VVY+FLQD R
Sbjct: 306  KAIKAEMDTLASRFPDDLEYKVLYDTTEFVETSITEVVQTLFISVALVVFVVYIFLQDAR 365

Query: 362  STLIPLVGVIVSLIGTFAFMALAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDVG 421
            STL+P + + VSLIGTFAF+   G SIN ++LFAL+L IG VVDDAI+VVE V    +  
Sbjct: 366  STLVPGIAIPVSLIGTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENVTRLMEDE 425

Query: 422  YRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISAI 481
              S   A+  AMK ++  VI ++LV +AVF P + M G +G  Y QF +T+ ++V IS++
Sbjct: 426  GLSPTEATSKAMKEVTGPVIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISVLISSV 485

Query: 482  NALTLSPALCALLLKPYINEDGTQKNNFAASFRKAFNSAFDILIEKYKNVVLIFIKRRWL 541
            NALTLSPALCA LLKP               F   FN+ F+     Y  +V   +++  L
Sbjct: 486  NALTLSPALCASLLKP--------PKKHTHGFHHLFNTYFERFTGGYMKLVSSLVRKLVL 537

Query: 542  AWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNVSTAAGSSLTTTDEVMERIEKRLMD 601
                  C + +   +     +  VP ED+    V++    G+SL  T+EVM  + K   +
Sbjct: 538  VGVAYACLIGVTGGIAKVLPSGFVPMEDKKAFMVDIQLPDGASLNRTEEVMRNLVKLTQE 597

Query: 602  IPQIKHVQKVAGYGLLAGQGSSFG-MLILKLKPWDERPNDEDNVQAVIGQVYGRTADIKD 660
             P +++V   +G+ +L G  SS G ++I+ L  W+ER + +    A++ ++  + A    
Sbjct: 598  EPGVENVIHASGFSILTGSVSSNGGLMIVTLSTWEERDSPDMVEAAIVAKLQAKYAANPS 657

Query: 661  ASVFAISPGMIPGYGMGNALELHMQDKMGGDINEFFTTTQQYLGVLNQRPEIAMAYSTFD 720
                A S   IPG G     E  +QD  G    E  +  +  +   N +PEIAMA+S F 
Sbjct: 658  VKAMAFSLPPIPGVGSVGGFEFVLQDTQGRSPQELASVMRALIMKANGQPEIAMAFSNFR 717

Query: 721  VRYPQWTVEVDAAKCKRAGITPDAVLSTLSGYYGGQYVSNFNRFSKVYRVMIQADPQFRL 780
               PQ  V+VD  K K  GI+ + + ST+    G  YV++FNRF KV+RV++QA+ +FR 
Sbjct: 718  ADVPQMYVDVDRDKAKALGISLNEIFSTMQTMLGSMYVNDFNRFGKVFRVILQAEGEFRN 777

Query: 781  DETSLDNAFVRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAI 840
             +  + + +VR ++GEM PLS  V +T   G + ++ +NM++S  +N  PA G+S+GDAI
Sbjct: 778  SDKDIASFYVRSASGEMVPLSTLVKVTPILGPDVMNAYNMFSSTTINGFPAPGFSSGDAI 837

Query: 841  KAVQETAVQSLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALYESFIIPFA 900
             A++  A ++LP GY +++ G T +E +      +IF +  +  YL L A YES+ IPFA
Sbjct: 838  AAMERAAQETLPAGYKFEWTGQTYQEIKAGNLAPLIFALALVFTYLFLVAQYESWSIPFA 897

Query: 901  VLLSVPCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLTEYAAERRKAGMGLI 960
            V+L+VP  ++G+FL   + G E N+Y Q GL++LIGL  K AIL+ E+A + R+ G  ++
Sbjct: 898  VMLAVPIAILGAFLNILLVGSELNLYAQIGLVLLIGLACKNAILIVEFAKQLREEGKSIL 957

Query: 961  ASAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALLFI 1020
             +A +AA+ R R +LMTA + + G+ PL++++G GA   R+LG  V GGM   TL    +
Sbjct: 958  DAAETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMMAATLVGTLL 1017

Query: 1021 VPTLFIAFQWLQERLR 1036
            VP  ++  Q L+ER++
Sbjct: 1018 VPVFYVIMQKLRERMK 1033