Pairwise Alignments

Query, 1065 a.a., multidrug resistance protein, AcrB/AcrD family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1049 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella loihica PV-4

 Score =  682 bits (1761), Expect = 0.0
 Identities = 366/1028 (35%), Positives = 583/1028 (56%), Gaps = 11/1028 (1%)

Query: 4    RTFIERPVLSAVISITIVVVGIIGLFSLPVEQYPDIAPPTIMVSTTYYGASAETLQKSVI 63
            R FI+RP+ + VI+I +++ G++ +  LPV QYP IAPPT++++  Y GASA+T++ +V 
Sbjct: 3    RFFIDRPIFAWVIAIIVMLAGVLSIMKLPVSQYPSIAPPTVVINAIYPGASAKTMEDTVT 62

Query: 64   APLEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSRATGQLPAEV 123
              +E+ + G++ + Y++ST+ + G   IT+ F    DPD+A V VQN++  A   LP EV
Sbjct: 63   QVIEQRMTGIDHLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQLAMPLLPQEV 122

Query: 124  TQVGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVGDLMIMGGEY 183
               GV  +K  +  L +    S D S ++N +S+Y+  NI   + R+ GVG++ + G +Y
Sbjct: 123  QAQGVKVNKSSSGFLMVLGFVSQDGSLEKNDISDYVGSNILDPMSRVPGVGEIQLFGAQY 182

Query: 184  SMRVWMKPDVMAQYKLIPSDITGVLAEQNIESATGSFG---ENSNETYQYTMKYKGRLIT 240
            +MR+W+ P  + QY L   DI   + EQN + + G  G     + +    T+  + RL T
Sbjct: 183  AMRIWLDPLKLTQYNLTSLDIMASIREQNAQVSAGQLGGAPSIAGQELNATVTAQSRLQT 242

Query: 241  PEEFGDIVIRSTDNGEVLKLKDIAEVQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEV 300
             EEF  I+I+S  +G  + L+D+A V+LG +SY+     +G P     +    G+NA   
Sbjct: 243  AEEFRKIIIKSDPSGAKVYLEDVARVELGSESYSVESFYNGRPAAGLAIKLATGANALAT 302

Query: 301  NQNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDF 360
             + + E ++E++   P+G+E+     +  F+  SI  VV TL+EA++LV +++Y+FLQ+F
Sbjct: 303  AERVREKVDEMKPFFPQGLEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFVIMYLFLQNF 362

Query: 361  RSTLIPLVGVIVSLIGTFAFMALAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDV 420
            R+TLIP + V V L+GTFA ++  GFSIN LT+FA+VL IG +VDDAI+VVE V+     
Sbjct: 363  RATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMSE 422

Query: 421  GYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISA 480
               S   A+  +M  I+ A++   L   AVF+P++FM G++G  Y QF +T+  A+ +S 
Sbjct: 423  DGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSVTIVSAMALSV 482

Query: 481  INALTLSPALCALLLKPYINEDGTQKNNFAASFRKAFNSAFDILIEKYKNVVLIFIKRRW 540
            + A+ L+PALCA +LKP        +  F       FN  FD +  +Y+  V   IKR  
Sbjct: 483  LVAIILTPALCATMLKPIAKGHHAVETGFFG----WFNRTFDKMTSRYEAGVAAMIKRAG 538

Query: 541  LAWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNVSTAAGSSLTTTDEVMERIEKRLM 600
                + V   V + ++     T+ +PDEDQG++F        S+  +T +VM +I    +
Sbjct: 539  RVMLIYVALTVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTKKVMSKISDFYL 598

Query: 601  DI--PQIKHVQKVAGYGLLAGQGSSFGMLILKLKPWDERPNDEDNVQAVIGQVYGRTADI 658
            +     +K V  V+G+   AG G + G+  + +K W ER     +V++V G+  G    +
Sbjct: 599  NETGDSVKSVFSVSGFS-FAGSGQNMGLAFVGMKDWSERTGPGQDVKSVAGRAMGMFMQM 657

Query: 659  KDASVFAISPGMIPGYGMGNALELHMQDKMGGDINEFFTTTQQYLGVLNQRPEIAMAYST 718
            K+A VFA  P  +   G  N  + ++QD+ G    +        LG+ +Q P +      
Sbjct: 658  KEAFVFAFVPPAVIELGTANGFDFYLQDRNGQGHEKLLEARNMLLGMASQNPNLVGVRPN 717

Query: 719  FDVRYPQWTVEVDAAKCKRAGITPDAVLSTLSGYYGGQYVSNFNRFSKVYRVMIQADPQF 778
                 P + + +D AK +   I  DAV S L   +GG YV++F    +V +V +Q D Q+
Sbjct: 718  GQEDAPMYRIHIDHAKLRALSIDIDAVNSVLGTAWGGSYVNDFIDRGRVKKVYVQGDAQY 777

Query: 779  RLDETSLDNAFVRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGD 838
            R+    LD  +VR S GEM P S F T T  YG+  L RFN   ++ +    A GYSTG 
Sbjct: 778  RMQPEDLDTWYVRNSQGEMVPFSAFATGTWEYGSPRLERFNGLPAMNIQGGTAQGYSTGA 837

Query: 839  AIKAVQETAVQSLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALYESFIIP 898
            A+  + E  V  LP G+G ++ G++ EE         ++ +  ++++L+L+ALYES+ +P
Sbjct: 838  AMADI-EAMVAKLPPGFGVEWNGLSYEERLSGNQAPALYALSIMVVFLVLAALYESWSVP 896

Query: 899  FAVLLSVPCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLTEYAAERRKAGMG 958
            FAV+L VP G++G+ L     GL N+++ Q GL+  +GL  K AIL+ E+A E  + G G
Sbjct: 897  FAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEKGAG 956

Query: 959  LIASAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALL 1018
            L+ + + A + RLRPILMT+L    G+ PL +SSGVG+    ++GTGV+GGM   T   +
Sbjct: 957  LVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTGVLGGMMSSTFLGI 1016

Query: 1019 FIVPTLFI 1026
            F +P  F+
Sbjct: 1017 FFIPIFFV 1024