Pairwise Alignments

Query, 1065 a.a., multidrug resistance protein, AcrB/AcrD family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1044 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  686 bits (1769), Expect = 0.0
 Identities = 372/1026 (36%), Positives = 587/1026 (57%), Gaps = 9/1026 (0%)

Query: 4    RTFIERPVLSAVISITIVVVGIIGLFSLPVEQYPDIAPPTIMVSTTYYGASAETLQKSVI 63
            R FI+RP+ + VI++ I++ G++ + SLPV QYP IAPPT+++S  Y GASA+ ++ SV 
Sbjct: 3    RFFIDRPIFAWVIALIIMLAGVLSIRSLPVSQYPSIAPPTVVISANYPGASAKIVEDSVT 62

Query: 64   APLEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSRATGQLPAEV 123
              +E+ + G++ + Y+ ST+ + G  SIT+ F    DPD+A V VQN++  A   LP EV
Sbjct: 63   QVIEQRMKGIDHLRYIASTSDSFGNASITLTFNAEADPDIAQVQVQNKLQGAMTLLPQEV 122

Query: 124  TQVGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVGDLMIMGGEY 183
               GV  +K  +  L +    S D S D+  +++Y+  NI+  + R+ GVG++ I G +Y
Sbjct: 123  QSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRVPGVGEIQIFGAQY 182

Query: 184  SMRVWMKPDVMAQYKLIPSDITGVLAEQNIESATGSFGENSN---ETYQYTMKYKGRLIT 240
            +MR+W+ P  + QY L   D+   +  QN + + G  G   +   +    T+  + RL T
Sbjct: 183  AMRIWLDPLKLTQYNLTSLDVVSAIRAQNAQVSAGQLGGTPSLPGQELNATVSAQSRLQT 242

Query: 241  PEEFGDIVIRSTDNGEVLKLKDIAEVQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEV 300
            PE+F  I+I+S  +G  + L D+A V+LG +SYA     +G P     +    G+NA + 
Sbjct: 243  PEQFRKIIIKSDTSGANVFLGDVARVELGSESYAVESLYNGKPASGIAIKLATGANALDT 302

Query: 301  NQNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDF 360
             + +   +EE+R   P G+++     +  F+  SI  VV TL+EAI+LV +++Y+FLQ+F
Sbjct: 303  AEAVRAKVEELRPFFPAGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQNF 362

Query: 361  RSTLIPLVGVIVSLIGTFAFMALAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDV 420
            R+TLIP + V V L+GTFA ++  GFSIN LT+FA+VL IG +VDDAI+VVE V+     
Sbjct: 363  RATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMAE 422

Query: 421  GYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISA 480
               S   A+  +M  I+ A++   L   AVF+P++FM G++G  Y QF +T+  A+ +S 
Sbjct: 423  EGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSV 482

Query: 481  INALTLSPALCALLLKPYINEDGTQKNNFAASFRKAFNSAFDILIEKYKNVVLIFIKRRW 540
            + AL L+PALCA +LKP     G    +    F   FN  FD L  +Y++ V   IKR +
Sbjct: 483  LVALILTPALCATMLKPLKKGHG----HIETGFFGWFNRGFDRLTNRYESSVAGIIKRSF 538

Query: 541  LAWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNVSTAAGSSLTTTDEVMERIEKRLM 600
                +    VV + ++     T+ +PDEDQG++F        S+  +T +V+E++    +
Sbjct: 539  RVMMIYAALVVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTLKVLEKVSDHYL 598

Query: 601  DIPQIKHVQKVAGYGLLAGQGSSFGMLILKLKPWDERPNDEDNVQAVIGQVYGRTADIKD 660
                ++ V  VAG+   AGQG + G+  + LK W ER     +VQ++ G+  G  + +K+
Sbjct: 599  AEEGVRSVFSVAGFS-FAGQGQNMGIAFVGLKDWSEREAPGMDVQSIAGRAMGVFSQMKE 657

Query: 661  ASVFAISPGMIPGYGMGNALELHMQDKMGGDINEFFTTTQQYLGVLNQRPEIAMAYSTFD 720
            A VFA  P  +   G  N  ++++QDK G   ++      Q LG+  Q P +        
Sbjct: 658  AFVFAFVPPAVIELGTANGFDMYLQDKNGQGHDKLVAARNQLLGMAAQNPNLVGVRPNGQ 717

Query: 721  VRYPQWTVEVDAAKCKRAGITPDAVLSTLSGYYGGQYVSNFNRFSKVYRVMIQADPQFRL 780
               P + + +D AK    GI    V S L+  +GG YV++F    +V +V +Q D Q+R+
Sbjct: 718  EDAPIYQLHIDHAKLSALGIEIANVNSVLATAWGGSYVNDFIDRGRVKKVYVQGDAQYRM 777

Query: 781  DETSLDNAFVRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAI 840
                LD  +VR + G+M P S F T    YG+  L RFN   ++ +    A G+STG A+
Sbjct: 778  QPEDLDTWYVRNNKGDMVPFSAFATGAWEYGSPRLERFNGLPAMNIQGATAPGFSTGAAM 837

Query: 841  KAVQETAVQSLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALYESFIIPFA 900
              + E  V+ LP G+G ++ G++ EE         ++ +  L+++L+L+ALYES+ +PFA
Sbjct: 838  N-IMEDMVKQLPPGFGIEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWSVPFA 896

Query: 901  VLLSVPCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLTEYAAERRKAGMGLI 960
            V+L VP G++G+ L     GL N+++ Q GL+  +GL  K AIL+ E+A E  + G GLI
Sbjct: 897  VILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEKGAGLI 956

Query: 961  ASAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALLFI 1020
             + + A + RLRPILMT+L    G+ PL +S+GVG+    ++GTGV+GGM   T   +F 
Sbjct: 957  EATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSSTFLGIFF 1016

Query: 1021 VPTLFI 1026
            VP  F+
Sbjct: 1017 VPLFFV 1022