Pairwise Alignments

Query, 1065 a.a., multidrug resistance protein, AcrB/AcrD family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1055 a.a., acriflavin resistance protein (RefSeq) from Shewanella sp. ANA-3

 Score =  712 bits (1837), Expect = 0.0
 Identities = 392/1054 (37%), Positives = 616/1054 (58%), Gaps = 19/1054 (1%)

Query: 6    FIERPVLSAVISITIVVVGIIGLFSLPVEQYPDIAPPTIMVSTTYYGASAETLQKSVIAP 65
            FI RP+ ++VISI IV++G+I +F LPV+QYP I PP + +S +Y GAS+ T  +SV  P
Sbjct: 5    FINRPIFASVISIVIVLLGVIAMFKLPVDQYPYITPPQVTISASYPGASSTTAAESVATP 64

Query: 66   LEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSRATGQLPAEVTQ 125
            LE+ +NGV +M YM+S +TN+G  S+T+ F  GT+ D+AAV+VQN   +A+G LP +V  
Sbjct: 65   LEQEVNGVPNMIYMSSKSTNSGGTSVTITFDVGTNADLAAVDVQNSAQQASGGLPIDVQT 124

Query: 126  VGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVGDLMIMGGE-YS 184
             GVT SK  +  L   +L+S D+ +DE +LSNY +INI+  + RI GVG     G   Y+
Sbjct: 125  EGVTVSKDASVELLKLALTSNDERFDEIYLSNYATINIESALRRIPGVGRTRNTGSRSYA 184

Query: 185  MRVWMKPDVMAQYKLIPSDITGVLAEQNIESATGSFGENSNE---TYQYTMKYKGRLITP 241
            MR+W+KPD MA Y L  +D+   +  QN ES  G+ G   N    +    +   GRL + 
Sbjct: 185  MRIWLKPDAMAGYSLTTTDVINAIKAQNKESPAGTIGTQPNNDDISLTLPISVAGRLSSV 244

Query: 242  EEFGDIVIRSTDNGEVLKLKDIAEVQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEVN 301
            + F +I++R+  +G +++L+DIA V+LG  +Y     ++G       V+   G+NA EV 
Sbjct: 245  QAFNEIIVRANPDGSIIRLRDIAGVELGSSAYTLQSQLNGENATILQVYLLPGANALEVT 304

Query: 302  QNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDFR 361
            + + + + E+ +  P+G++      ++ F+  SI EV+ TLIEA++LV+LVVY+FLQ+ R
Sbjct: 305  RKVKQTMAELSQKFPQGMKWEVFYDASIFIQESIDEVIHTLIEALVLVVLVVYLFLQNVR 364

Query: 362  STLIPLVGVIVSLIGTFAFMALAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDVG 421
            +TLIP + V VSLIGT A M   GF+IN ++L ALVL IG VVDDAI+VVE V+      
Sbjct: 365  ATLIPAIAVPVSLIGTLAAMLAFGFTINTVSLLALVLAIGIVVDDAIVVVENVERLIHEK 424

Query: 422  YRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISAI 481
              S+  A+  AMK +S A++ +SLV  AVF+PVSF+ G +G  Y +F + + VAV IS +
Sbjct: 425  GMSAIDATRIAMKELSGALVATSLVLCAVFVPVSFLAGITGIMYREFAVAITVAVLISTL 484

Query: 482  NALTLSPALCALLLKPYINEDGTQKNNFAASFRKAFNSAFDILIEKYKNVVLI---FIKR 538
             ALTLSPALCALLLKP    +          F    N   D+   +Y  +V +   + KR
Sbjct: 485  VALTLSPALCALLLKPSKAPE--------RGFFHWLNRKLDVGTNQYVGLVALTNKYAKR 536

Query: 539  RWLAWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNVSTAAGSSLTTTDEVMERIEKR 598
             +LA++++        F+M+   +S +PDEDQG  F++++   GS++  T+ ++++ E+ 
Sbjct: 537  SYLAFAIMFGGTY---FIMSHLPSSFMPDEDQGRFFIDMTLPDGSTVNRTEAILKKAEQY 593

Query: 599  LMDIPQIKHVQKVAGYGLLAGQGSSFGMLILKLKPWDERPNDEDNVQAVIGQVYGRTADI 658
            +   P + +   +AG    +G   + G   + LKPW ER      VQ+V+  +     ++
Sbjct: 594  VRANPAVAYSFTLAGENRRSGANQANGQFEVVLKPWAEREASHATVQSVMKAIDKDLKNV 653

Query: 659  KDASVFAISPGMIPGYGMGNALELHMQDKMGGDINEFFTTTQQYLGVLNQRPEIAMAYST 718
             +A      P  +PG G G+ +E+ +QD  G   +    T  + +  L  +PE+A A  +
Sbjct: 654  LEAEFNLYLPSAVPGLGNGSGVEMQLQDTSGTHFDGLIETANELVEQLKLQPEVASASVS 713

Query: 719  FDVRYPQWTVEVDAAKCKRAGITPDAVLSTLSGYYGGQYVSNFNRFSKVYRVMIQADPQF 778
                 PQ  + VD AK    G+    + ST+        V++FN F +VYRV IQA+  +
Sbjct: 714  LQSAIPQLHLTVDEAKAMAIGVNVSDIYSTIKTLTDSSTVNDFNLFGRVYRVKIQAEESY 773

Query: 779  RLDETSLDNAFVRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGD 838
            R     + + +VR S+G M P+        + G  S++ +N+++S ++N  PA GY+TGD
Sbjct: 774  RQFPHQIKDYYVRSSSGAMVPIGVLAKYDYTVGPSSVTHYNLFSSASINVTPATGYATGD 833

Query: 839  AIKAVQETAVQSLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALYESFIIP 898
             I+A++  A   LP  + Y++ GIT +E Q +  T I  G+  L ++L L+ALYES+ IP
Sbjct: 834  VIQAIERVATPILPDEFKYEWTGITYQEVQSANQTGIAIGLALLFVFLFLAALYESWSIP 893

Query: 899  FAVLLSVPCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLTEYAAERRKAGMG 958
             AVLL  P  L+G+ +   + G+++N++ Q   I LIG+ AK AIL+ E+A +  + G  
Sbjct: 894  VAVLLIAPIALLGAAVTTLISGMQSNLFFQVAFIALIGMAAKNAILIVEFANQLHQQGRT 953

Query: 959  LIASAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALL 1018
             I++A+ AA  R RPILMT++  I G+ PL+LS G GA   +S+   ++GGM + T   +
Sbjct: 954  RISAALEAATMRFRPILMTSMAFILGVLPLVLSEGPGAVSRQSISLPILGGMVLATTIGI 1013

Query: 1019 FIVPTLFIAFQ-WLQERLRPVQSRPTEDWQIEEE 1051
              VP  F+    W++++      +  E   +++E
Sbjct: 1014 VFVPLFFVTTAGWVKKKTIKQPIKTKEQLLLDQE 1047