Pairwise Alignments

Query, 285 a.a., transcriptional regulator, AraC-type (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 288 a.a., AraC family transcriptional regulator from Herbaspirillum seropedicae SmR1

 Score =  100 bits (248), Expect = 5e-26
 Identities = 78/284 (27%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 8   KEEYQKCVNVVVEYINQHLGEDIDLKSLARISNFSPFYFHRIMKAFLGEPIGTFIVRTRT 67
           K+ YQ     V+++I  HL   ++++ LA +++FS F+F R    F G  +  +I+  R 
Sbjct: 6   KKAYQARFERVLDHIEAHLHAPLEVEQLANVAHFSRFHFQRQFADFTGVGVARYILLMRL 65

Query: 68  EAAARLLRYS-DIPIADIAYRIGYSSPSSLSKVFRQFYGISPLEYRNNKNFVIMKPAIIR 126
           + A+  L +     I DIA   G+ +P S ++ FR  +G SP ++R   ++       + 
Sbjct: 66  KHASLQLAFQPQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRRAPDWPSWHERFVF 125

Query: 127 PDLELKSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRLWQFIKEQKL----PMGDFSPLC 182
              E K +++ +   +V  IR++         G    + QFI  +K     P+       
Sbjct: 126 RIPERKVDVQ-VEITHVEPIRIALLAHRGPVNGLNATVAQFIAWRKASGLSPVERCRTFG 184

Query: 183 IYHDDPKVTPAEKLRTDVCMVMPVQVAPKGDVGFKTL-PAGRYAIFLYKGTYDNLQAVYD 241
           +  D+P  TP E+ R  +C  +   +        ++L P GR A   + G ++ L     
Sbjct: 185 LAWDNPDTTPPEQFRFGICGELEGDLPGNAQGVVESLIPGGRCARVRHVGAHERLGDSIY 244

Query: 242 TIYGKCLPEMECTLRDEPSAERYLNNPCETAPEELLTEIYIPVE 285
            +Y + LPE    LRD P    YLN   +T P ELLT+IY+P++
Sbjct: 245 PLYRQWLPESGEELRDFPLYFHYLNLLPDTPPGELLTDIYLPLK 288