Pairwise Alignments

Query, 337 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 381 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  130 bits (327), Expect = 5e-35
 Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 5/211 (2%)

Query: 126 SVEAPLGSKTKLYLPDGTLVWLNAGSRMTYSQGFGVDNRKVELEGEGYFEVKRNEKIPFF 185
           ++  P G + ++ LPDGT VWLNA S + Y   F    R VEL GEGYFEV +N+  PF 
Sbjct: 174 TISTPAGGQYQVTLPDGTKVWLNALSSLKYPTTFLGKYRMVELAGEGYFEVAKNKNKPFK 233

Query: 186 VKTKDLQLQVLGTKFNFRDYPEDHEVVVSLLEGKVGLNNLLREEKEAVLSPDERAVLNKA 245
           +KT   ++ VLGT FN   Y +D EV  +L+EG V + N        +L P ++AV  K 
Sbjct: 234 LKTAKQEISVLGTHFNVSAYADDTEVKTTLVEGGVAVKN-FSPLATGLLKPGQQAVFEKT 292

Query: 246 NGLLTVESVTASNASQWTDGYLFFDEELLPDIAKELERSYNVKIHIANDSLKTFRFYGNF 305
                V +V       W +G+  F+ E +    ++L R Y+V I    D      ++G  
Sbjct: 293 G--FKVSNVDVEEYIAWKNGFFMFNNEDIKAAMQKLARWYDVDIEYVGDF--DGIYFGGS 348

Query: 306 VRREQNIQEVLEALASTEKMQYKIEERNITI 336
             +  N+QE L+ L ST+K ++KIE R I I
Sbjct: 349 FSKHNNLQETLKILESTDKFKFKIEGRRIKI 379



 Score = 27.7 bits (60), Expect = 5e-04
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 64  DKAFENFRNRVESQKEIQSTSRRGFSLSALWRYAAVVAIIIAVGCISYW--QGEVNVKDT 121
           +K F     +++ Q+EI+  +R  + L       AV A  IAV    ++      +VK  
Sbjct: 55  EKIFNKINQQID-QQEIKRPNRYFYRL-------AVAASFIAVLGFGWFLLSERTDVKKI 106

Query: 122 FADISVEAPLGSKTKLYLPDGTLVWLNAGSRMTYSQGFGVDNRKVELEGEGYFEVKRNE 180
               S+  P G+K  L L DGT + L+     T ++  G+   K   +G+  + +  N+
Sbjct: 107 NTSASLIKPGGNKAFLTLADGTKINLDQAVNGTIAKQEGIQITKT-ADGQLIYTILENK 164