Pairwise Alignments

Query, 272 a.a., TPR-repeat-containing protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 262 a.a., type IV pilus biogenesis/stability protein PilW (RefSeq) from Shewanella loihica PV-4

 Score = 53.1 bits (126), Expect = 6e-12
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 39  KAEELLLQALKLEPKNAKNAMLFSNLGLVQRRLGEYDKALESYSFALNFAPLAVPILLDR 98
           +AEE+ L+A+K+ PK  ++A  + NLG+  R+ G+  KA   +  ALN+ P     LL+ 
Sbjct: 132 QAEEMFLRAVKM-PKYTRSASSYENLGICSRKSGDLQKAQRYFEMALNYDPRRANSLLEL 190

Query: 99  AAINLEMGN---TDRAYTDYCQVLDEDKQN 125
           + I L++GN     +    Y +V+ E  Q+
Sbjct: 191 SEIELDLGNYSAAKKGLARYHRVVPESAQS 220



 Score = 26.2 bits (56), Expect = 8e-04
 Identities = 33/175 (18%), Positives = 72/175 (41%), Gaps = 5/175 (2%)

Query: 22  QQLSEKAIEYIEMDSLSKAEELLLQALKLEPKNAKNAMLFSNLGLVQRRLGEYDKALESY 81
           +Q  +  + Y++  +  +A+  L +AL+  P N ++  +   L    + +GE +   ++Y
Sbjct: 47  RQRVQLGLTYLQKGNSEQAKYNLDKALEFAP-NIEDVHVA--LAYYYQSVGELELTEKAY 103

Query: 82  SFALNFAPLAVPILLDRAAINLEMGNTDRAYTDYCQVLDEDKQNKEALLMRAYIYVLRR- 140
             A+N +  +   + +      +    D+A   + + +   K  + A          R+ 
Sbjct: 104 RNAINASDASGDSMNNFGVFLCQQAKYDQAEEMFLRAVKMPKYTRSASSYENLGICSRKS 163

Query: 141 -DYPAARIDYNRLLEIDPQSYSGRLGLATLEQKEGKFKEALEILNKMITATPEDA 194
            D   A+  +   L  DP+  +  L L+ +E   G +  A + L +     PE A
Sbjct: 164 GDLQKAQRYFEMALNYDPRRANSLLELSEIELDLGNYSAAKKGLARYHRVVPESA 218