Pairwise Alignments

Query, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 190 a.a., RNA polymerase from Azospirillum brasilense Sp245

 Score = 84.3 bits (207), Expect = 1e-21
 Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 9/182 (4%)

Query: 2   EQKDESYYIERILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNL 61
           E  DES   E  + G    F     R+ R    L  ++VG   DAEE++QD FL+ + + 
Sbjct: 6   EDDDESLMAETAV-GNRAAFDRLTRRHLRRSLALAHRVVGNASDAEEVVQDAFLQIWTHA 64

Query: 62  NRYKGE-CRFSTWIYRIAYNAAISATRKKKQEFLYIEENTINNVPDEMADNVLAPAETEE 120
           +R++G+  RFSTW+YRI  N +I   R++   F  +++      P   AD +LA    E 
Sbjct: 65  DRWRGDGTRFSTWLYRIVVNRSIDYRRRRS--FQPLDDAVEVADPAIGADGLLA----ER 118

Query: 121 QL-ERLEMAIDQLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKICVLM 179
           QL   ++ AI  L   ++A ++L YY+E S  E  EVL +S+S ++  L R R+ +   +
Sbjct: 119 QLGAAVDAAIAALPDRQRAALSLCYYQEMSCAEASEVLHVSVSAMESLLVRARRMVRTRL 178

Query: 180 NN 181
           N+
Sbjct: 179 NS 180