Pairwise Alignments

Query, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 192 a.a., hypothetical protein from Azospirillum brasilense Sp245

 Score = 74.3 bits (181), Expect = 1e-18
 Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 6/169 (3%)

Query: 12  RILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNLNRYKGE-CRF 70
           RI  G+   +   + R+ +  Y L  ++ G   +AE++ QD FL+ ++  + +  E  +F
Sbjct: 15  RIRAGDQAAYRALVHRHLKRAYALARRMSGSDAEAEDIAQDAFLQVWQRRDHWTDEGAKF 74

Query: 71  STWIYRIAYNAAISATRKKKQEFLYIEENTINNVPDEMADNVLAPAETEEQLERLEMAID 130
           +TW+YR+  N  I   R+   E L    +++   PD   D V    +  +   RL  A D
Sbjct: 75  TTWLYRVVLNRCIDHKRRPAGEDL----DSVPEPPDHAPDAV-THIQRRQVAARLRDAQD 129

Query: 131 QLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKICVLM 179
           +L  +++A + L+Y E  S  E+  ++++S++ V+  L R R+++  L+
Sbjct: 130 RLPQQQRAALALYYNEGLSGAEVATIMQISVTAVESLLKRARQQLRTLL 178