Pairwise Alignments

Query, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 183 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

 Score = 79.7 bits (195), Expect = 3e-20
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 12  RILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNLNRYKGECRFS 71
           R L G+   F+  + R+ + LY L V++VG P+DA +L+Q+ F+ A   L RY  E    
Sbjct: 15  RSLAGDQRAFAEIVSRHKQFLYGLTVRLVGSPDDALDLVQEAFVSAHGALKRYDPERPMR 74

Query: 72  TWIYRIAYNAAISATRKKKQEFLYIEENTINNVPDEMADNVLAPAETEEQLERLEMA--I 129
           TW+ RIA N A    RK++   +      + + PD  AD V    +  ++ E  E++  I
Sbjct: 75  TWLARIAINKARDWRRKERVRAVLRSVLPLGDAPDVAADQVSVEQQVSDRAELAEVSRQI 134

Query: 130 DQLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRK 173
            ++  + + ++ L   E     ++ E+L +S  +V+ RL+R R+
Sbjct: 135 AKMPAKLREVLVLRTIEGLPQLQVAEMLGISEKSVETRLYRARR 178