Pairwise Alignments

Query, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Cupriavidus basilensis FW507-4G11

 Score = 83.2 bits (204), Expect = 3e-21
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 21/188 (11%)

Query: 2   EQKDESYYIERILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNL 61
           E++ +   +ER+  G+   F + + +Y R +  L+ ++V    + E++ QD F+KA+R L
Sbjct: 3   EREADQLLVERVQQGDKRAFELLVVKYHRKIIRLISRLVRDSAEVEDVAQDAFIKAYRAL 62

Query: 62  NRYKGECRFSTWIYRIAYNAAIS--ATRKKKQE------------FLYIEENTINNVPDE 107
            +++GE  F TW+YRIA N A +  AT+ ++ E            F   E+    N P+ 
Sbjct: 63  PQFRGESAFYTWLYRIAVNTAKNYLATQGRRPEASSDIDAEEAETFADGEQLRDINTPES 122

Query: 108 MADNVLAPAETEEQLERLEMAIDQLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVR 167
           M         T +  E +  A++ L  E +  ITL   E  S EEI E +   I  V+ R
Sbjct: 123 M-------LHTRQVAETVNRAMEALPEELRTAITLREIEGLSYEEIAEAMGCPIGTVRSR 175

Query: 168 LHRTRKKI 175
           + R R+ I
Sbjct: 176 IFRAREAI 183