Pairwise Alignments

Query, 923 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 961 a.a., Excinuclease ABC subunit A from Pseudomonas syringae pv. syringae B728a

 Score =  767 bits (1980), Expect = 0.0
 Identities = 430/945 (45%), Positives = 599/945 (63%), Gaps = 38/945 (4%)

Query: 7   ISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 66
           I I+GAR +NLKNID+ +PR+KL+VITGLSGSGKSSLAFDTLYAEGQRRYVESLS+YARQ
Sbjct: 21  ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 80

Query: 67  FLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARVGRTYSPVS 126
           FL  M KP+ D I+G+ PAI+IEQK  S NPRSTVGT TEIY+YLRLLYARVG+   P  
Sbjct: 81  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRCPDH 140

Query: 127 GEEVKKHSTEDIVNCMLSHPEGTRYTVLTPIRLREDRTLQQQLEIDLK-QGFNRVEVNGE 185
              ++  +   +V+ +LS PEG++  +L P+ +RE +     +  +L+ QGF R  VNG+
Sbjct: 141 DIPLEAQTVSQMVDLVLSQPEGSKLMLLAPV-IRERKGEHLSVFEELRAQGFVRARVNGK 199

Query: 186 MKRIDEYKPVAGDEVY---LLVDRMAVANTKDAISRLTDSAETAMYEGDGTCMLRFYLPD 242
           +  +DE   +   + +   ++VDR  V    D   RL +S ETA+   DG  ++   + D
Sbjct: 200 LCELDELPKLDKQKKHSIDVVVDRFKVR--ADLQQRLAESFETALKLADGIALVA-PMDD 256

Query: 243 GTTRLYNFSTKFEAD--GITFEEPNDQMFSFNSPIGACPVCEGFGKVIGIDEHLVVPNRS 300
                  FS +F     G    E   ++FSFN+P GACP C+G G     D   +V N  
Sbjct: 257 EPGEEVIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NAE 315

Query: 301 LSVYEGAIVCWRGEKMGEWKDELIHNADK-FDFPIFTPYYELTDEQRRTLWEGN------ 353
           L++ EGAI  W  ++   +  +++ +  K + F +  P+ ++  + ++ L  G+      
Sbjct: 316 LTLAEGAIRGW--DRRNVYYFQMLGSLSKHYGFSLEMPFKQIPADMQKILLNGSGSQSVD 373

Query: 354 -QYFHGINDFFKMLE---------ENQYK----IQYRVMLARYRGKTICPKCHGTRLKPE 399
            +Y +   D  K            E +Y+       R  LA++ G   CP C GTRL+ E
Sbjct: 374 FRYLNDRGDIVKRAHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRRE 433

Query: 400 AGYVRVDGKSISELVDLPITELKEFFDHLNLNEHDSNVARRILIEINSRIRFLIDVGLGY 459
           A +V V  K++  +  LPI +   +F+ L L      +A +IL EI  R++FL++VGL Y
Sbjct: 434 ARHVWVGEKTLPAVTSLPIGDATHYFETLKLTGRRGEIADKILKEIRERLQFLVNVGLDY 493

Query: 460 LTLNRLSNSLSGGESQRINLATSLGSSLVGSLYILDEPSIGLHSRDTDRLIRVLRQLQEL 519
           LTL+R +++LSGGE+QRI LA+ +G+ LVG +YILDEPSIGLH RD DRL+  L+ L+++
Sbjct: 494 LTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDI 553

Query: 520 GNTVVVVEHDEEIIRAADYIIDIGPNAGRLGGEVVYQGDMKDLKKGSNSHTVRYLLGEEE 579
           GNTV+VVEHDE+ IR ADY++DIGP AG  GG +V +G   ++    +S T +YL G  +
Sbjct: 554 GNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPDEVMSHPDSLTGKYLSGRVK 613

Query: 580 IPVPEHRRPWNNYIELT--GARENNLKGVNVKFPLNVMTVVTGVSGSGKSTLVRDIFYRA 637
           I VP  R P N  + LT  GAR NNL+ VN+  P+ ++T VTGVSGSGKSTL+ +  +  
Sbjct: 614 IAVPAKRTPRNKKLSLTLKGARGNNLQNVNLDIPIGLLTCVTGVSGSGKSTLINNTLFPL 673

Query: 638 LKRELDECSDRPGEFSSISGSLRDLRNIEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWAE 697
               L+  +            L+ L  +  +DQ+PIG++ RSNP TY   +  IR+L+A 
Sbjct: 674 SATALNGATTLEAATHDSINGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAG 733

Query: 698 QPLAKQMGYTAGHFSFNSEGGRCEECKGEGTITVEMQFMADLVLECESCHGKRFKADTLE 757
            P ++  GY  G FSFN +GGRCE C+G+G I VEM F+ D+ + C+ C  KR+  +TLE
Sbjct: 734 VPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLE 793

Query: 758 VKFQDKNIYDVLEMTVNQAVEFFTEHGQKKIVKRLLPLQDVGLGYIKLGQSSSTLSGGEN 817
           VK++ KNI++VLEMT+ +A EFF       + ++L  L DVGL YIKLGQS++TLSGGE 
Sbjct: 794 VKYKGKNIHEVLEMTIEEAREFF--DAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEA 851

Query: 818 QRVKLAFYLSQEKADPTLFIFDEPTTGLHFHDIRKLLDAFDALIRRGHSIVIIEHNMDVI 877
           QRVKL+  LS+     TL+I DEPTTGLHF DI++LLD    L   G+++V+IEHN+DVI
Sbjct: 852 QRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVI 911

Query: 878 KCADYVIDLGPEGGDKGGNIVAVGTPEEVAACGASYTGQFLKEKL 922
           K AD+++DLGPEGG +GG I+A GTPE+VA    SYTG +LK  L
Sbjct: 912 KTADWLVDLGPEGGSRGGQIIATGTPEQVAEMEQSYTGHYLKPLL 956