Pairwise Alignments

Query, 923 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 968 a.a., excinuclease ABC subunit A from Caulobacter crescentus NA1000

 Score =  784 bits (2025), Expect = 0.0
 Identities = 434/947 (45%), Positives = 595/947 (62%), Gaps = 36/947 (3%)

Query: 7   ISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 66
           I ++GAR +NLK++ VDIPR +LVV+TGLSGSGKSSLAFDT+YAEGQRRYVESLS+YARQ
Sbjct: 8   IRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67

Query: 67  FLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARVGRTYSPVS 126
           FL  MSKP+ D I+G+ PAI+IEQK  SRNPRSTVGT TEI++Y+RLL+ARVG  YSP +
Sbjct: 68  FLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWARVGIPYSPAT 127

Query: 127 GEEVKKHSTEDIVNCMLSHPEGTRYTVLTPIRLREDRTLQQQLEIDLKQGFNRVEVNGEM 186
           G  ++  +   +V+ + + PEGTR  +L P+        ++++    K GF R++++G+ 
Sbjct: 128 GLPIESQTISQMVDKITALPEGTRLYLLAPVVRDRKGEYKKEIADWQKAGFQRLKIDGQY 187

Query: 187 KRIDEYKPVAGD---EVYLLVDRMAVANTKDAISRLTDSAETAMYEGDGTCMLRFY-LPD 242
             I++   +      ++ ++VDR  V    D   RL DS E A+   DG  +  F  L +
Sbjct: 188 YPIEDAPALDKKFKHDIDVVVDR--VVTKPDMEQRLADSIEQALRLADGLAVAEFATLEE 245

Query: 243 GTT--RLYNFSTKFEA--DGITFEEPNDQMFSFNSPIGACPVCEGFGKVIGIDEHLVVPN 298
           G T  R   FS +F     G T  E   ++FSFN+P GACPVC+G G  +  D  LV+P+
Sbjct: 246 GETEPRRILFSERFACPVSGFTIAEIEPRLFSFNNPAGACPVCDGLGAKLAFDADLVIPD 305

Query: 299 RSLSVYEGAIVCWRGEKMGEWKDELIHNADKFDFPIFTPYYELTDEQRRTLWEGNQY--- 355
           +  +++ GA+  W       +   L   A  + F +  P+++L+ E R  +  G++    
Sbjct: 306 KDRTLHGGAVAPWAKGPSPLYTQTLQALARHYGFSMDEPWHKLSTEARDVVLNGSKGAKI 365

Query: 356 ----------------FHGINDFFKMLEENQYKIQYRVMLARYRGKTICPKCHGTRLKPE 399
                           F G+    +           R  L R++  T C  CHG RLKPE
Sbjct: 366 KFVYDDNARKYEVEKPFEGVLPNLERRWRETDSSWVREELGRFQSDTPCESCHGKRLKPE 425

Query: 400 AGYVRVDGKSISELVDLPITELKEFFDHLN--LNEHDSNVARRILIEINSRIRFLIDVGL 457
           A  V+V G  I+E+  + I   +++F  L   L++    +ARRIL EIN R+RFL+DVGL
Sbjct: 426 ALAVKVSGMDIAEVSMMAIRPARDWFAGLEGKLSDKQMEIARRILKEINDRLRFLVDVGL 485

Query: 458 GYLTLNRLSNSLSGGESQRINLATSLGSSLVGSLYILDEPSIGLHSRDTDRLIRVLRQLQ 517
            YL ++R S +LSGGESQRI LA+ +GS L G LY+LDEPSIGLH RD  RL+  L+ L+
Sbjct: 486 DYLNMSRGSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNTRLLTSLQGLR 545

Query: 518 ELGNTVVVVEHDEEIIRAADYIIDIGPNAGRLGGEVVYQGDMKDLKKGSNSHTVRYLLGE 577
           +LGN+V+VVEHDEE I  ADY+ID+GP AG  GGE+V QG   D+     S T +YL G 
Sbjct: 546 DLGNSVLVVEHDEEAILTADYVIDMGPAAGVHGGEIVAQGKPADIMANPKSLTGQYLTGA 605

Query: 578 EEIPVPEHRRPWN--NYIELTGARENNLKGVNVKFPLNVMTVVTGVSGSGKSTLVRDIFY 635
            EI VPE RRP +    + + GA  NNLKGV  + P+   T +TGVSG GKST   +  Y
Sbjct: 606 REIEVPEQRRPISKKKMLRVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLY 665

Query: 636 RALKRELDECSDRPGEFSSISGSLRDLRNIEFVDQNPIGKSSRSNPVTYIKAYDEIRKLW 695
           +A  R L+  SD P     I G L     +  +DQ+PIG++ RSNP TY  A+  IR  +
Sbjct: 666 KAAARRLNNASDAPAPHERIEG-LEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRDWF 724

Query: 696 AEQPLAKQMGYTAGHFSFNSEGGRCEECKGEGTITVEMQFMADLVLECESCHGKRFKADT 755
           A  P +K  GY  G FSFN +GGRCE C+G+G I +EM F+ D+ + C+ C GKR+  +T
Sbjct: 725 AGLPESKARGYGPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDICKGKRYNRET 784

Query: 756 LEVKFQDKNIYDVLEMTVNQAVEFFTEHGQKKIVKRLLPLQDVGLGYIKLGQSSSTLSGG 815
           L+V F+ K I DVL+MTV +A +FF       I  ++  L+ VGL YIK+GQ ++TLSGG
Sbjct: 785 LDVVFKGKTIADVLDMTVEEAADFF--KAVPPIRDKMETLKRVGLSYIKVGQQATTLSGG 842

Query: 816 ENQRVKLAFYLSQEKADPTLFIFDEPTTGLHFHDIRKLLDAFDALIRRGHSIVIIEHNMD 875
           E QRVKL+  LS+     TL+I DEPTTGLHF D +KLL+    L  +G+++V+IEHN+D
Sbjct: 843 EAQRVKLSKELSKRATGRTLYILDEPTTGLHFEDTKKLLEVLHELADQGNTVVVIEHNLD 902

Query: 876 VIKCADYVIDLGPEGGDKGGNIVAVGTPEEVAACGASYTGQFLKEKL 922
           V+K AD+++D GPEGGD GG IVAVG+P++VA   AS+TG++LKE L
Sbjct: 903 VVKTADWLLDFGPEGGDGGGEIVAVGSPQDVAKVEASWTGRYLKELL 949



 Score = 60.1 bits (144), Expect = 7e-13
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)

Query: 591 NYIELTGARENNLKGVNVKFPLNVMTVVTGVSGSGKSTLVRDIFY-RALKRELDECSDRP 649
           N+I + GARE+NLK V+V  P   + V+TG+SGSGKS+L  D  Y    +R ++  S   
Sbjct: 6   NFIRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 65

Query: 650 GEFSSISGS-----LRDLRNIEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWA 696
            +F  +        +  L     ++Q    ++ RS   T  + +D +R LWA
Sbjct: 66  RQFLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWA 117



 Score = 53.5 bits (127), Expect = 6e-11
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)

Query: 1   MSENKHISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESL 60
           +S+ K + + GA  NNLK +  +IP      ITG+SG GKS+   +TLY    RR   + 
Sbjct: 617 ISKKKMLRVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNNAS 676

Query: 61  SSYARQFLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARV-- 118
            + A            + ++     I I+Q    R PRS   T T  +  +R  +A +  
Sbjct: 677 DAPA-------PHERIEGLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRDWFAGLPE 729

Query: 119 --GRTYSP 124
              R Y P
Sbjct: 730 SKARGYGP 737