Pairwise Alignments

Query, 249 a.a., putative polysaccharide biosynthesis protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 245 a.a., acylneuraminate cytidylyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 76.6 bits (187), Expect = 4e-19
 Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 30/254 (11%)

Query: 1   MNYAFVVQARLGSTRLPGKILKPFYGNQSILDLMVHKLSAISNIPV-IIATTNSVINEPI 59
           M    + QAR+GS+RLPGK+L P   N+ +L+  + +++    I   IIATT    ++ I
Sbjct: 1   MRVICITQARMGSSRLPGKVLTPI-ANKPMLEYHIERVAQSHLIDTHIIATTIEDNDQAI 59

Query: 60  EKKALALGVKCFRGEENDVLKRFIDV-----AEYFDIQGIFRICSDNPFLDVHAARQLVE 114
                   ++CFRG+E DVL+RF +      AE  DI  I R+  D P +      +L++
Sbjct: 60  ADYCHTKQLQCFRGDEQDVLQRFYEAALSVGAEQEDI--IIRLTGDCPLI----CPELID 113

Query: 115 IAMKSCNDYISFDIDGTPSIKTHF-------GFWGEFVTLDALKRVIGFTDDLLYREHVT 167
            A++           G P+  TH        GF  E  ++ +L            REHVT
Sbjct: 114 QAIRKHQ-------TGDPAQYTHISLAFFPRGFDVEVFSMHSLTLAFQHAHTQAQREHVT 166

Query: 168 NYIYSHPELFNIQWISGSPVVSKHHNIRLTIDTLEDFSVAQRIYRDLQEKRVEISIEVIV 227
            ++Y+ P+   +   +G    +     RL +D ++D  + ++I + L E  +    + I 
Sbjct: 167 LFLYTQPDAKIVPIETGK---ASWGEFRLCVDEIDDLRLVEQIIQLLGENWLTADHKTIC 223

Query: 228 DYVRRHAEYIQLMK 241
             +  + E  Q+ K
Sbjct: 224 KLLTDNPELAQINK 237