Pairwise Alignments

Query, 350 a.a., periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 377 a.a., secretion protein from Azospirillum brasilense Sp245

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 80/317 (25%), Positives = 152/317 (47%), Gaps = 13/317 (4%)

Query: 30  PVKTTIVESRSVIRKDFS-GIVEAVEYVKLAFRVSGQIISLPVIEGEKVKKGQLIAAIDP 88
           PV+ + V++ +V R+  + G + + E V +   V+G++  +  +EG+ VKKG ++  +D 
Sbjct: 63  PVEASPVKTGTVSRQVTAVGSLLSSESVVIRPEVAGKVSEIAFLEGQAVKKGAVLIRLDD 122

Query: 89  RDIALQYAATKSAYETASAQVERNKRLLSRQAISVQEYEISLSNYQKAKSEYELSSNNMR 148
                  A  +++   + A++ R   L  ++    +  E +L+  Q  ++  +L+   + 
Sbjct: 123 SIARATLAQAQASIAFSRAELARADELYRQRTGPARNREQALAKLQSDEAAVQLAKAQLE 182

Query: 149 DTKLTAPFDGSIEKRLVENYQRVNSGEGIVQLVNTQNLRIKFTIPDAYLYLLRAKDPRFL 208
              LTAPFDG +  R V     V +G+ IV L   + L++ F +P+ YL  +R       
Sbjct: 183 KLTLTAPFDGVLGLRKVSVGDVVAAGKDIVNLEAIEILKLDFRVPELYLPTVRT-GQTLK 241

Query: 209 VEFDTFKGHVFKARLEEYLDISTEGTGIPVSITIDDPSFDRDLYAVKPGFTCSIRFTADV 268
           V  D+F G  F   +   +D   +  G  V I    P+ D    A++PG    +  T D 
Sbjct: 242 VAVDSFGGRTFDGTVYA-IDPLVDVNGRAVVIRARVPNSDG---ALRPGLFARVALTLDQ 297

Query: 269 GPLVQDSWTIIPLSAVFGESDGNNMYVWVVEDNKVHKRKIVVNAPTGEAQVLVSEGLKPG 328
            P    +  ++P  AV   + GN  +V+ V + K  +  + +      A+V ++ GL+PG
Sbjct: 298 TP----NAVLVPEQAV--SAFGNRQFVFKVVEGKAVQTTVTL-GERRNAEVEITAGLQPG 350

Query: 329 EQIVIAGVYQLVEGESI 345
           + +V AG  ++ +G  +
Sbjct: 351 DVVVTAGQLKIRDGAPV 367