Pairwise Alignments

Query, 350 a.a., periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 357 a.a., acriflavin resistance periplasmic protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  133 bits (334), Expect = 8e-36
 Identities = 96/350 (27%), Positives = 167/350 (47%), Gaps = 15/350 (4%)

Query: 2   KNIYVIALAAILFQGCGQ---KKEMTVPATRPVKTTIVESRSVIRKDFSGIVEAVEYVKL 58
           ++  V +   I   GC Q   + + T   +RP     ++ + + +  F+G+V + E  +L
Sbjct: 8   RHALVFSALTIGLLGCEQAPVEVKATGDISRPAMIVTLQPQGISQTQFTGVVRSAERAEL 67

Query: 59  AFRVSGQIISLPVIEGEKVKKGQLIAAIDPRDIALQYAATKSAYETASAQVERNKRLLS- 117
           AF+ SG++ S+ V EG+KV +GQ +A +D  ++     +    ++ A    +R  ++ S 
Sbjct: 68  AFKQSGKLASMTVQEGDKVSRGQTLATLDDAELKTALNSANVEFKQAQTDFDRGNKIFST 127

Query: 118 RQAISVQEYEISLSNYQKAKSEYELSSNNMRDTKLTAPFDGSIEKRLVENYQRVNSGEGI 177
            QAIS  + +        A ++   +  ++ +  L APFDG++ ++LV N+  V   + +
Sbjct: 128 SQAISRSDLDQLKVKRDLAANKVAKAQQDLANASLNAPFDGTVAQKLVNNFATVQPNQPV 187

Query: 178 VQLVNTQNLRIKFTIPDAYLYLLRAKDPRFLVEFDTFKGHVFKARLEEY-LDISTEGTGI 236
             + N  NL +   +P   L+L      R + E +   G  F      Y  D        
Sbjct: 188 YVVHNPANLEVMINVP-GKLFLEPNAGQRAVAEIEGLAGQRFGLTYRYYAADADPVSQTY 246

Query: 237 PVSITIDDPSFDRDLYAVKPGFTCSIRFTADVGPLVQDSWTIIPLSAVFGESDGNNMYVW 296
            V +  DDPS    L    PG +  +    D     Q+   ++P+ AV   + G + +VW
Sbjct: 247 QVVLGFDDPSAANLL----PGMSAKVYPVMD--SAAQNQHLLVPVDAVVPSNTG-SQFVW 299

Query: 297 VVE-DNKVHKRKIVVNAPTGEAQVLVSEGLKPGEQIVIAGVYQLVEGESI 345
           +V  D+ V KR I V    G  Q+ V+EGL PG++IV+AGV+ L EG  +
Sbjct: 300 LVNADSSVAKRSIRVGNILGN-QIQVTEGLSPGDKIVVAGVHALAEGMKV 348