Pairwise Alignments

Query, 350 a.a., periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 398 a.a., RND transporter MFP subunit from Cupriavidus basilensis FW507-4G11

 Score = 97.8 bits (242), Expect = 4e-25
 Identities = 96/366 (26%), Positives = 162/366 (44%), Gaps = 38/366 (10%)

Query: 4   IYVIALAAILFQGCGQKKEMTVPATRPVKTTIVESRSVIRK---DFSGIVEAVEYVKLAF 60
           + ++ LA +   GC ++ E   P  RPV+  +++ +  + K   +FSG V      +L F
Sbjct: 39  VTLLLLAGVALAGCSREAEKA-PEIRPVR--LMQLQPGVGKTEVEFSGDVRPRIESRLGF 95

Query: 61  RVSGQIISLPVIEGEKVKKGQLIAAIDPRDIAL-------QYAATKSAYETASAQVERNK 113
           RV G+I +  V  G  V++GQ +A +DP D+ L       QY A K+  + A A ++R  
Sbjct: 96  RVGGKIAARLVDVGATVRRGQPLARLDPTDLGLAEAGSRAQYDAAKTDRDLAEADLKRYN 155

Query: 114 RLLSRQAISVQE-------YEISLSNYQKAKSEYELSSNNMRDTKLTAPFDGSIEKRLVE 166
            L +++ IS  E       ++ + S  ++A++     SN      L A  DG +     E
Sbjct: 156 ELFAKKFISAAEQQRRQATFDSAASRLRQAEAGLRNQSNQTAYGVLAADADGVVTLIEAE 215

Query: 167 NYQRVNSGEGIVQLVNTQNLRIKFTIPDAYLYLLRAKDPRFLVEFDTFKGHVFKARLEEY 226
             Q V +G+ +V++  T    +   +P+  +  LR       V      G      + E 
Sbjct: 216 VGQVVAAGQSVVRVAQTAEKEVAVGLPEDQVERLRGISD-VTVRTWAEPGRALPGHVREI 274

Query: 227 LDISTEGT-GIPVSITIDDPSFDRDLYAVKPGFTCSIRFTADVGPLVQDSWTIIPLSAVF 285
             ++   T      I++ +P  D      K G T  + FT        D+   +PLSA+ 
Sbjct: 275 SPMADPVTRTYAARISVPNPPAD-----FKFGMTAVVTFTR----TSDDAALRVPLSALL 325

Query: 286 GESDGNNMYVWVVEDNKVHKRKIVVNAPTGEAQ---VLVSEGLKPGEQIVIAGVYQLVEG 342
            +   N ++V+      V      VN   GE Q   + V +GL PG+ IV AGV+ L  G
Sbjct: 326 QKQGSNQVWVYDAATGAVQP----VNVTLGELQGNEIQVRQGLSPGQTIVTAGVHLLKPG 381

Query: 343 ESIKSI 348
           + +K +
Sbjct: 382 QKVKPL 387