Pairwise Alignments

Query, 279 a.a., transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 296 a.a., helix-turn-helix domain-containing protein from Rhodopseudomonas palustris CGA009

 Score = 70.5 bits (171), Expect = 4e-17
 Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 15/260 (5%)

Query: 19  YLTEKALQKEKGLYKFIWVRQGSITVEIDHQEMVLSKDDVISLT---HLQHLEFKSIDGE 75
           Y  E  +   + L++ +W+  G+ T+ +D Q +   +D  +++     + H    S   E
Sbjct: 39  YQWEIDVHAHRSLHQILWIGSGTATIALDEQRV--QRDGPVAVIVPPGVVHGFRFSPHTE 96

Query: 76  YMTLLFNSNFYCIYGNDHEVSCSGFLFN---GSSHLVRFTLNEEERRQLDQITEAMENEF 132
                FN +       + +V  +G        ++ ++ F  +     ++D++   + +EF
Sbjct: 97  GQVFTFNPHAMI----EGDVPATGQALRDLFAAARILEFEPDGAATMRIDRLFAELADEF 152

Query: 133 TVSDSLQEEMLRILLKRFIIQCTRIARQRLDITREKESGFEIVRQYYNLVDEHYRTKKQV 192
              D+     + + L R I+   R+A+Q     R    G +   ++  LV+ H+     +
Sbjct: 153 ASPDA-GNSPVPLWLGRAIVW--RLAQQSERQARYAARGGDQFTRFLLLVETHHCEHWPI 209

Query: 193 QDYADMLHKSPKTLSNIFSTCKLPSPLRVIHERVEAEAKRLLLYSNKSAKEIADILGFED 252
             YAD L  +P+ L+ +       S L V+H R+  EA R L Y      ++A  LGFED
Sbjct: 210 ARYADELGMTPERLNRLAKAETGQSALDVVHARLTREACRRLTYIAAPISKLAFELGFED 269

Query: 253 QASFSRFFKNMTGQSAVQFR 272
            A F RFFK  TGQS   +R
Sbjct: 270 PAYFCRFFKRRTGQSPRDYR 289