Pairwise Alignments

Query, 429 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 406 a.a., ABC-type antimicrobial peptide transport system, permease component from Dechlorosoma suillum PS

 Score = 64.3 bits (155), Expect = 6e-15
 Identities = 85/433 (19%), Positives = 171/433 (39%), Gaps = 37/433 (8%)

Query: 1   MIKLYFKQAFHLLKENKLLSSISIIGTALAI-AMIMVIVITLRATIAPFAPESYRDRMLI 59
           M+     +A+  +  N+L + ++++G  + + A+++++ I   A  A     +     L 
Sbjct: 1   MLTAMLGEAWRAMGANRLRTFLTMLGMVIGVGAVVLMLAIGQGAQYAVAQSINSMGSNLF 60

Query: 60  FRYAGFQYKTN-ENWQSNGPVSYKTAKACFKEMAAPEAVTITSSFSETMLAAKPAGEKVS 118
              +GF       +   N P    T      E+   E        S  ++         +
Sbjct: 61  IVLSGFTNAGGVRSGSGNAPTLTVTDAEAITELDGVETAAPVHQGSAQLVYGS---SNWN 117

Query: 119 CSVLQVDDDFWKVFKFDFLSGYPFDKATFDAGATKAVISEDIARQLFGTSDVVGKTFLLN 178
             V+     +  V  +  + G PF  +   A    A+I +  A+ LFG  +  GKT  + 
Sbjct: 118 SYVIGTTPAYLDVRSWALVDGSPFTDSDLRASTRVALIGKTAAQNLFGAENPTGKTLRIG 177

Query: 179 HSAYMICGVVRPVSKL--ARYAYAQIWIPLSSTDAFTASWGEYGIMGMVSVYILAKSQDD 236
            + ++I GV+ P  +    R     + +PL  T A    +G      + ++ + A + + 
Sbjct: 178 QAPFLILGVLAPKGQSLDGRDQDDVLIVPL--TTAQRKLFGTPFQGSVRAIMVKAAAPEV 235

Query: 237 FPAIRMEAER-LRDRYMEGYPDYELLYRDQPDTYFVAAQRYSANNPPAVKQAVRQYIITL 295
            PA+       LR R+           R   D  F      +  +  A    +   ++  
Sbjct: 236 MPAVENSMNALLRQRHR---------IRPGQDDDFNVRNLTAVADSAAETTRIMSLLLGA 286

Query: 296 I--ILLIVPAVNLSGLTLSRMRKRLSEIGVRKAFGAPRRELMIQVLSENMLYSLLGGVLG 353
           I  + L+V  + +  + L  + +R  EIG+R A GA  ++++ Q L E ++ S+ G ++G
Sbjct: 287 IASVSLLVGGIGIMNIMLVSVTERTREIGIRMAIGAREKDILTQFLLEAIVISIAGCLIG 346

Query: 354 LILSYGATFFLGSMLFSIDFMGNGVTDLRTMCMDLLFDPVVFLLAFFACFALNLLSAAIP 413
           L+L  G               G  +T+L T    ++    V ++AF     + +     P
Sbjct: 347 LLLGIG---------------GAVLTNLLTGTAVIISGSSV-IVAFSVAAGVGIFFGYYP 390

Query: 414 AWRVTRTNIVDAI 426
           A +  R + ++A+
Sbjct: 391 ARKAARLDPIEAL 403