Pairwise Alignments

Query, 429 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 402 a.a., ABC-type antimicrobial peptide transport system, permease component from Sphingomonas koreensis DSMZ 15582

 Score = 74.3 bits (181), Expect = 6e-18
 Identities = 96/439 (21%), Positives = 183/439 (41%), Gaps = 53/439 (12%)

Query: 1   MIKLYFKQAFHLLKENKLLSSISIIGTALAIAMIMVIVITLRATIAPFAPESYRDRMLIF 60
           M+   F  A   +  +KL S ++ +G  + +A ++ +V   +AT A     + + ++   
Sbjct: 1   MLGTTFTLAIRSILRHKLRSFLTTLGIIIGVAAVVAMVTLGKATTA-----AVQQQIASL 55

Query: 61  RYAGFQYKTNENWQSNG----PVSYKTAKA-CFKEMAAPEAVTITSSFSETMLAAKPAGE 115
                Q +  + +   G    P  ++ A     KE  A   VT  +  ++T   A   G 
Sbjct: 56  GTNILQVRPGQGFGRGGGGPRPPDFEEADVEAVKEQIA--GVTAVAPQAQTTGTAIHEGA 113

Query: 116 KVSCSVLQVDDDFWKVFKFDFLSGYPFDKATFDAGATKAVISEDIARQLFGTSDVVGKTF 175
             S ++    +DF+KV  +   +G  F  A   AG +  +I   + + LF     VG+  
Sbjct: 114 NWSTTINGTTNDFFKVQPWPLTAGRAFSPAEEAAGKSVCIIGNTVRQNLFRGGSAVGQRM 173

Query: 176 LLNHSAYMICGVVRPVSKLARYAYAQ-----IWIPLSSTDA-FTASWG-EYGIMGMVSVY 228
            +N+ +   C V+  +S   +  +       + +P+      FT +      ++G+   Y
Sbjct: 174 RINNIS---CDVIGTLSTRGQAGFGGDQDDVVIMPIKMVQRRFTGNRDIRLMLVGVDQAY 230

Query: 229 ILAKSQDDFPAIRMEAERLRDRYMEGYPDYELLYRDQPDTYFVAAQRYSANNPPAVKQAV 288
             A+ Q     +  E  R+     + +  +        DT  ++A              +
Sbjct: 231 DSAQVQSSLSDLLRERRRIEPGAEDNFNIF--------DTAQISATLTGTTT------LL 276

Query: 289 RQYIITLI-ILLIVPAVNLSGLTLSRMRKRLSEIGVRKAFGAPRRELMIQVLSENMLYSL 347
            Q +  +  I LIV  + +  + L  + +R  EIG+R A GA   E+++Q L E ++ S+
Sbjct: 277 TQIVAAVAGISLIVGGIGIMNIMLVSVTERTREIGIRLAIGAIASEVLLQFLVEAIVLSM 336

Query: 348 LGGVLGLILSYGATFFLGSMLFSIDFMGNGVTDLRTMCMDLLFDPVVFLLAFFACFALNL 407
           LGGV+GL L+         ++ +I      +T L  M +   FD  + ++AF    A+ +
Sbjct: 337 LGGVIGLALA--------QLVIAI------ITPL--MQVPWTFDLQINVIAFLISAAIGV 380

Query: 408 LSAAIPAWRVTRTNIVDAI 426
           +    PA R    N +DA+
Sbjct: 381 VFGFFPARRAASLNPIDAL 399