Pairwise Alignments

Query, 492 a.a., putative outer membrane protein OprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 489 a.a., outer membrane efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score = 62.0 bits (149), Expect = 5e-14
 Identities = 69/335 (20%), Positives = 142/335 (42%), Gaps = 18/335 (5%)

Query: 144 TLKLTQPILGVNNVKWNRRIEPVRYAEAKAEFITATEEVTMRAITYYFDLLLAKETLGTA 203
           +L+   PI     +   + I     AE + E   AT ++  + +  Y+ + + +  + T 
Sbjct: 144 SLQAMWPIYTGGQITAAQGIHAAMVAEKQQELQLATRDLFTQLVDRYYAVDVTQSLVSTQ 203

Query: 204 RQNLTNANQLYEVAIAKRKMGQISENELLQLKLSALNAKAALTEAESDLNAKMFQLRAFL 263
            + + +  +  + A+A  + GQI++ E L  +++  NAK  L  A       +  L   L
Sbjct: 204 TELVASLTKHVDHALALEREGQIAKVERLNAQVALDNAKVNLGSARRQHEMAVIALSRML 263

Query: 264 GVGEDEILRP--VVPESVDCGKMEYNMVLNKALERNSFAQNIRRRQLEADYAVATARGNL 321
              +     P  V+P++   G +         L ++   + +  ++ +A+  V+  +G  
Sbjct: 264 QQSDVSTNSPLFVLPQAPSLGDLT-----QVTLSQHPALKLLEAKEAQANGLVSLEKGKY 318

Query: 322 RSINLFASVGYTGESRELSSVYRNLQDNQIVQVGVQIPILDWGKRRGKVRVAKSNRDVVL 381
               +F    YT    E  S++  ++ + +V VGV++P+L    R GKV  AKS     L
Sbjct: 319 HP-TVFLFGNYT--LYEDDSLFSKVEPDWMVGVGVKVPLLSRDGRSGKVEAAKS----AL 371

Query: 382 SKIRQEQINFNQDIFLLVEHFNNQAQQLEIAKEADG----IAQQRYKTSIETFLIGKINT 437
            + R  +    QD+ LL++    Q  Q E   +A      +A +  +     F  G   +
Sbjct: 372 LQARYTKAQTRQDLSLLLDQSYRQLLQAEEEVKALNTSLELASENLRLREIAFNQGLSTS 431

Query: 438 LDLNDAQNAKDEARRKHISELYYYWYYFYQIRSLT 472
           +D  DA+      + + +   Y Y   + ++ +++
Sbjct: 432 IDRVDAELKLSAVKTQQLGASYRYVQAYARLMAIS 466