Pairwise Alignments

Query, 363 a.a., major outer membrane protein OmpA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 367 a.a., OmpA/MotB domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 53.5 bits (127), Expect = 9e-12
 Identities = 60/215 (27%), Positives = 90/215 (41%), Gaps = 25/215 (11%)

Query: 148 DTRTYEMEYLWQEGKFLVAGRFGLGCDLRLNDRLSINIEANA--NALSDKFNSKKAGNCD 205
           + + +  EY    G   VA  FG G      D L +  +     N   DK+N+    +  
Sbjct: 129 NNKQWGSEYYSDSG---VAPYFGAGIGYNFTDNLKLQAKYRRYENLDEDKWNTLDMESNY 185

Query: 206 WQLNALVGVSIRLGKSYTKT--APVYYEPEP-----VVTEQPKPAPVVEQPQPK------ 252
           W L     +S R G++      APV   P+      V  ++ + A      +        
Sbjct: 186 WGLE----LSYRFGRAAPAAVAAPVVVAPKDSDNDGVTDDKDQCANTPSNHKVDANGCTV 241

Query: 253 -KEVVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKGTGNARI 311
            +EV  +    +I FA NSA +      +I  L  Y+ +N  A V + G+A    GN   
Sbjct: 242 YREVTEKHELGSIRFANNSAVVNSASYGQIEKLANYMNQNPRATVLIGGHA-SNVGNPDY 300

Query: 312 NSKLSEKRANNVVEALKAK-GIAADRITVAYKGDT 345
           N  LSE+RAN V E L +K GI+ DR++    G T
Sbjct: 301 NMDLSERRANAVAELLVSKYGISQDRVSAKGYGIT 335