Pairwise Alignments

Query, 524 a.a., Ribonuclease G (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1088 a.a., ribonuclease E (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  272 bits (696), Expect = 4e-77
 Identities = 170/522 (32%), Positives = 280/522 (53%), Gaps = 34/522 (6%)

Query: 1   MTSEIVIDVQPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDV 60
           M   ++   Q +E+ +AL++ + L +L  E         N+Y G+I ++ P L A FVD 
Sbjct: 1   MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY 60

Query: 61  GYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLNSISKATLLPDLDKDGTVANTLKVGQ 120
           G E+  FL   ++        ++  +  S + + N                +   +  GQ
Sbjct: 61  GAERHGFLPLKEIA------REYFPKGYSFQGRPN----------------IKEVVSEGQ 98

Query: 121 EVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLMSI 180
           EV+VQI KE    KG  LT+ IS AG YLVL+P N +     +    +ER  LK+ +  +
Sbjct: 99  EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADL 158

Query: 181 K-PKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAMAKVQKATKYPTLIYEETSRAVGL 239
           + P   G+IVRT   GK   EL  +LKVL  HW  A+ +  +    P LI++E++  V  
Sbjct: 159 EVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWA-AITEAAQTKGAPFLIHQESNVIVRA 217

Query: 240 LRDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDNFGITKQIKSS 299
           +RD        I ++   +Y E K ++ L+ PD    VKLY+ ++P++ ++ I  QI+S+
Sbjct: 218 IRDYLRRDVGEILIDHPRIYEEAKQHIALVRPDFVERVKLYEAEVPLFTHYQIESQIESA 277

Query: 300 FGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLR 359
           F + V   SG  ++I+ TEAL  +D+NS   TK  + +E  AL  NL AADE+ARQLRLR
Sbjct: 278 FQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEE-TALNTNLEAADEIARQLRLR 336

Query: 360 DMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMD 419
           D+GG++V+DFIDM    +++++  R+   +  DRAR  +  +S+FGLM+++RQR+RP+++
Sbjct: 337 DLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLE 396

Query: 420 VNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHVHPYVAAFINQGLVS 479
            +   ICP C G+GTI+S    T++L   I  L+ +  +K+ +  +   V   +   L++
Sbjct: 397 ESAAHICPRCHGQGTIRS----TESLALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLN 452

Query: 480 LRRK----WQMKYGFGIKIIPSQKLAFLQY-VFYDTHGEEID 516
            +RK     + ++   + +IP   +    Y V      +EID
Sbjct: 453 EKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHRTDDEID 494