Pairwise Alignments

Query, 524 a.a., Ribonuclease G (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1062 a.a., ribonuclease E from Herbaspirillum seropedicae SmR1

 Score =  258 bits (659), Expect = 8e-73
 Identities = 155/501 (30%), Positives = 272/501 (54%), Gaps = 34/501 (6%)

Query: 10  QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFLH 69
           Q +E+ +A+++ + L+++  E         N+Y G I ++ P L ACFV+ G E+  FL 
Sbjct: 10  QQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEERHGFLP 69

Query: 70  YLDLGPQFNSLEKFVKQTLSDKKKLNSISKATLLPDLDKDGTVANTLKVGQEVVVQIVKE 129
           + ++         + K+ +  +                 + ++   L+ GQE++VQ+ KE
Sbjct: 70  FKEVA------RSYFKEGIDVR-----------------NASIKEALREGQEIIVQVEKE 106

Query: 130 PISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLMSIK-PKNFGVI 188
               KG  LTS IS AGRYLVL+P N +     +    E+R  L++ +  +  P    VI
Sbjct: 107 ERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVI 166

Query: 189 VRTVAEGKRVAELDGELKVLIKHWEDAMAKVQKATKYPTLIYEETSRAVGLLRDLFNPSF 248
            RT   G+ V EL  +L  L++ W       Q A+    LIY+E+S  +  +RD F P  
Sbjct: 167 ARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQSASG-AFLIYQESSLVIRAIRDYFQPDI 225

Query: 249 ENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDNFGITKQIKSSFGKTVSYKS 308
             I ++ + ++++ + ++  + PD  + VK Y+  +P++  F I  QI++++ +TV   S
Sbjct: 226 GEILIDTDDIHDQAQQFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPS 285

Query: 309 GAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRDMGGIIVVD 368
           G  ++I+HTEAL  VDVNS   T+ ++  E  A   NL AADE+ARQLRLRD+GG+IV+D
Sbjct: 286 GGAIVIDHTEALVSVDVNSARATRGSD-IETTAFNTNLEAADEVARQLRLRDLGGLIVID 344

Query: 369 FIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVNTTEICPT 428
           FIDM  ++N++++  R+   +  DRAR  +  +S+FGLM+++RQR+RP++   +   CP 
Sbjct: 345 FIDMENSKNQREVEGRLKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPR 404

Query: 429 CFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHVHPYVAAFINQGLVSLRR----KW 484
           C G G I+     T++   ++  ++ +  +K+ S  +H      +   L++ +R    K 
Sbjct: 405 CNGTGHIRD----TESSALQVLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKI 460

Query: 485 QMKYGFGIKIIPSQKLAFLQY 505
           + ++   + +IP++ L    Y
Sbjct: 461 ETRHRVTVIMIPNKHLETPHY 481