Pairwise Alignments

Query, 229 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 244 a.a., two component transcriptional regulator, winged helix family from Synechococcus elongatus PCC 7942

 Score =  146 bits (369), Expect = 3e-40
 Identities = 94/231 (40%), Positives = 134/231 (58%), Gaps = 11/231 (4%)

Query: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAL-KMDISSYHLILLDVMMGEISGFK 63
           +ILVVDDE  +  IL+  L   GYEV TA   EEAL     ++  L++LDVMM ++ G+ 
Sbjct: 7   KILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDGYG 66

Query: 64  MANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123
           +   L+K+     VPII +TA     D +TG  LGADDY+ KPFS +E+ AR+++VLRR 
Sbjct: 67  VCQELRKESD---VPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRV 123

Query: 124 ATMETEKAPER--LTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFSRED 181
                   P    +   S+ ID  K++V   DE ++LT  EF +L LLV   G  FSR +
Sbjct: 124 EKSGANGIPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAE 183

Query: 182 ILARIW--SDEVYVLDRTIDVNITRLRKKIGE---YGKCIVTRLGYGYCFE 227
           IL  +W  + E +V  R +DV+I+RLR K+ +     + I+T  G GY F+
Sbjct: 184 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPGNPELILTARGTGYLFQ 234