Pairwise Alignments

Query, 229 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 242 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  139 bits (351), Expect = 4e-38
 Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 8/226 (3%)

Query: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISS-YHLILLDVMMGEISGFK 63
           RIL+V+DE DL  +++ NLE+  +EV   N+  +A +   S  + L+LLD M+ +  G  
Sbjct: 15  RILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRMLSDGDGLT 74

Query: 64  MANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123
           +   L+++ K+  +P + ITA+D+E D V G   GADDY+ KPFS+ E+ ARVKA+LRR+
Sbjct: 75  LCQQLRQEGKS--LPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRS 132

Query: 124 ATMETEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFSREDIL 183
           A    ++    LT+  LVID   ++V+  ++ + LT +EF++L  L Q+  +VFSR  +L
Sbjct: 133 AQQAADQ--YALTFDELVIDSKTREVTAANQPLALTAREFDLLYYLAQHPRQVFSRMQLL 190

Query: 184 ARIWSDEVYVLDRTIDVNITRLRKKIG---EYGKCIVTRLGYGYCF 226
             +W       + T++ +I RLR K+       + + T  G GY F
Sbjct: 191 EAVWGYSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYKF 236