Pairwise Alignments

Query, 416 a.a., putative two-component system sensor histidine kinase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 457 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  120 bits (300), Expect = 1e-31
 Identities = 107/415 (25%), Positives = 187/415 (45%), Gaps = 50/415 (12%)

Query: 41  LIICSLFQIGGIVTYLNN-INRKLRLFFDAIED-----RDNTFSYPEQGINEEQQQLNRS 94
           LI+  L   GG    L+  + R L     A+E      +DN FS       + Q +   S
Sbjct: 42  LIVACLLLSGGFAWLLSRWLTRGLSTSLKALEVGLLNIKDNDFSVNIPVTGDSQLKALAS 101

Query: 95  L-NRINALLAQTKMDYQKQEHFYRSLLEKVPNGIIAWNNSKKIIFVNNTALTLL----NI 149
           L N   A+L + +    ++E     +++  PN ++  ++ ++II+ N+ A  L      I
Sbjct: 102 LFNESAAVLRRERQYIYQRELLLDKVIQSSPNVMVLLDDRQRIIYANDAARHLFAQGARI 161

Query: 150 ESLTLYSQLENI-------LQNEKNR-------------KRLSLSQSQMKLQDETITLLS 189
           E   L   L+ +       + N K               +   LS+ +  L  +   L+ 
Sbjct: 162 EGSMLDELLDGVSEELAGAVNNPKGGLFTLASVEEGGEDETWHLSRGRFLLNGQYHHLIL 221

Query: 190 IQDIDDRLNENESESWSKLSHVLTHEIMNTIAPIISLSQTLASYPE-ISEKGIRGLH-II 247
           ++ +   LN  E   W K+  +++HE+ N++API S+  +     E + +  ++ +   I
Sbjct: 222 LKQMTRELNRQEVAVWKKVIRIISHELNNSVAPIASMVNSGRKLTEPLDDPKLKLIFDTI 281

Query: 248 QAQSERLMEFTESFRHLSYLPQPEKRLFSLSDLLHNLEELLQTNFQENNISFTLRCSPEP 307
           + ++  L +F  ++   + LP P+K       L+  L E         +  F+L      
Sbjct: 282 EDRTSHLSQFIFNYARFAKLPLPKKSEVDWHKLVTQLAE---------HFRFSLVGELPR 332

Query: 308 MMTEGDEKQLSQVFLNLLKNAMQALEGHPHGELSLQ------AEQDEYIVIDITDNGPGI 361
                D  QL QV LNLLKNA ++  G P   +SL       A+  + + I+ITD G G+
Sbjct: 333 RCGYFDLIQLEQVLLNLLKNAHES--GSPEESVSLSVREQGLADGSDGVTIEITDEGSGM 390

Query: 362 PPEIMDKVFIPFFTTKSEGTGIGLSLCKEIIRRHEGHLAIKESRAGKTVFHIELP 416
            PE++ +  +PF++TK  GTG+GL LC+EII  H+G +++        +  I LP
Sbjct: 391 SPEVLTQALLPFYSTKQSGTGLGLPLCREIIEAHDGRISLHNREHKGLLVRIWLP 445