Pairwise Alignments

Query, 465 a.a., protein rtcB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 408 a.a., RNA ligase from Cupriavidus basilensis FW507-4G11

 Score =  169 bits (428), Expect = 2e-46
 Identities = 141/396 (35%), Positives = 186/396 (46%), Gaps = 42/396 (10%)

Query: 83  PLMYKTYGGKFIETLAKQQMNLAMRLPVTVGGALMPDAHAGYGLPIGGVLATDNAVIPYA 142
           P+   T+G    +    Q  N A    +    A+MPD H G G  IG V+ T  A+IP A
Sbjct: 16  PVKMWTHGVPVDDGARAQLANTAQMPFIFKHLAVMPDVHLGKGSTIGSVIPTRGAIIPAA 75

Query: 143 VGVDIGCRM-----SLTVFDAKADFLKRYSYQIKEAL---KDFTHFGMDGGL------GF 188
           VGVDIGC M     +LT  D   D L      I++A+   +     G D G         
Sbjct: 76  VGVDIGCGMIAVKTTLTASDLP-DSLGPLRSAIEKAVPHGRSSNRSGRDKGAWGAVPDAV 134

Query: 189 EQEHEVLDREEFRLTPLLKDLQGKAVRQ-LGSSGGGNHFVEFGEIALQADNVLNLPEGSY 247
           +     L     R+T     L     R  LG+ G GNHF+E           + L E   
Sbjct: 135 DASWAALAGGFERITRKYPKLARTNNRNHLGTLGTGNHFIE-----------VCLDESQS 183

Query: 248 VALLSHSGSRGLGAAIAKHYSLLA-----REVCKLPREAQHFAWLSLDSEEGQEYWMSMN 302
           V  + HSGSRG+G AI   +  LA     R    LP   +  A+L   SE  ++Y  ++ 
Sbjct: 184 VWFMLHSGSRGVGNAIGNTFIELAQADMRRHFINLPD--RDLAYLVEGSEHYEDYVFAVE 241

Query: 303 LAGDYARACHERIHLNL---SKALGLKPVAN----VNNHHNFAWKEEIAPGRMAIVHRKG 355
            A  YAR   E +  N+   ++A+  KP A     VN HHN+  KE    G   ++ RKG
Sbjct: 242 WAQQYARRNRETMMANVLDAARAVIGKPFATEMEAVNCHHNYVQKERHF-GEDVLITRKG 300

Query: 356 ATPAQKGQAGLIPGSMATAGYLVCGKGVEESLCSASHGAGRAMSRQKAKESFTQSALKKM 415
           A  A+ G+ G+IPGSM    Y+V GKG  ES CS SHGAGR MSR +AK  F+    +  
Sbjct: 301 AVSAKAGELGIIPGSMGARSYIVRGKGNAESFCSCSHGAGRTMSRSEAKRRFSVEDQRLA 360

Query: 416 LSQADVTLIGGSIEEIPLAYKDIDRVMYTQETLVEV 451
               +       I+EIP+AYKDID VM  Q  LVE+
Sbjct: 361 TQGVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEI 396